Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC078938.1-201ENST00000620993 318 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.16□□□□□ -2.38
HLA-DQA1P01909 Y_RNA.44-201ENST00000362676 108 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.61-201ENST00000362835 102 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 SNORA36.1-201ENST00000363424 132 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.199-201ENST00000364014 102 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNY1-201ENST00000364228 113 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNU5E-4P-201ENST00000364931 120 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNY3P5-201ENST00000384127 102 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 SNORA8.2-201ENST00000384372 139 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.508-201ENST00000384502 114 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNA5SP193-201ENST00000410353 107 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 RNU6-863P-201ENST00000515989 104 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 MIR3129-201ENST00000581095 76 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 AC097639.2-201ENST00000603159 172 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 MIR8066-201ENST00000617280 78 ntBASIC0.15□□□□□ -2.39
HLA-DQA1P01909 AL589743.1-201ENST00000551932 2712 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 RNA5SP62-201ENST00000363457 110 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.237-201ENST00000364439 102 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 RNU6-867P-201ENST00000364956 107 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.567-201ENST00000384736 106 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 MIR644A-201ENST00000385262 94 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 RNU4-83P-201ENST00000410863 133 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 SNORD71-201ENST00000411292 86 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 AC113618.1-201ENST00000416747 285 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 MIR4431-201ENST00000579990 94 ntBASIC0.14□□□□□ -2.39
HLA-DQA1P01909 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.42-201ENST00000362660 108 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.512-201ENST00000384518 102 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 MIR616-201ENST00000385293 97 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 U8.15-201ENST00000390947 134 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 RNU6-985P-201ENST00000410182 104 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 SNORD2.1-201ENST00000458762 69 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 AL662814.1-201ENST00000617364 121 ntBASIC0.13□□□□□ -2.39
HLA-DQA1P01909 AL596211.1-201ENST00000569873 2277 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.13-201ENST00000362403 112 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 RNU6-653P-201ENST00000363074 106 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.355-201ENST00000365462 98 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 RNU6-815P-201ENST00000384080 113 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 AL442663.2-201ENST00000554385 511 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 AL365265.1-201ENST00000621045 234 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 uc_338.16-201ENST00000621804 95 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 AC091932.4-201ENST00000623386 200 ntBASIC0.12□□□□□ -2.39
HLA-DQA1P01909 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.82-201ENST00000363000 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.92-201ENST00000363043 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 RNU6-403P-201ENST00000363163 104 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.202-201ENST00000364083 110 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.235-201ENST00000364412 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.306-201ENST00000365015 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.312-201ENST00000365089 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.322-201ENST00000365151 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.416-201ENST00000384014 113 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.430-201ENST00000384081 110 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 RNU6-1109P-201ENST00000391187 107 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 RNA5SP237-201ENST00000410414 113 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.618-201ENST00000410949 107 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.650-201ENST00000459002 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 RNU7-80P-201ENST00000459562 61 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 TRBVB-201ENST00000477100 408 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.777-201ENST00000516982 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 AP001094.1-201ENST00000579805 193 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 MIR5197-201ENST00000583721 112 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.771-201ENST00000598668 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.789-201ENST00000622480 102 ntBASIC0.11□□□□□ -2.39
HLA-DQA1P01909 RNU6-349P-201ENST00000362402 107 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 SNORA33.2-201ENST00000365413 134 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 RNY1P4-201ENST00000384595 115 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.588-201ENST00000391254 102 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 RNU6-381P-201ENST00000391259 108 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 RNA5SP261-201ENST00000410536 106 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 AC096949.1-201ENST00000412047 152 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 AL512326.2-201ENST00000426359 151 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 AC073261.1-201ENST00000429409 121 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 SEPT7P4-201ENST00000437076 306 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 RPL39P25-201ENST00000449384 154 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 AC141846.1-201ENST00000568348 142 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 MIR3152-201ENST00000579801 74 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 MIR4491-201ENST00000581087 68 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 MIR4514-201ENST00000581410 57 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 MIR6082-201ENST00000613604 109 ntBASIC0.1□□□□□ -2.39
HLA-DQA1P01909 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.1□□□□□ -2.39
HLA-DQA1P01909 Y_RNA.542-201ENST00000384641 111 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
HLA-DQA1P01909 Y_RNA.590-201ENST00000410140 107 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 Y_RNA.679-201ENST00000516416 91 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 SNORA31.14-201ENST00000516728 116 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 AC069113.3-201ENST00000521019 150 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 MIR4282-201ENST00000583613 67 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 AL356055.1-201ENST00000602528 446 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 AL442067.1-201ENST00000613261 223 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 U2.14-201ENST00000615943 113 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.09□□□□□ -2.4
HLA-DQA1P01909 MIR924-201ENST00000638017 53 ntBASIC0.09□□□□□ -2.4
HLA-DQA1P01909 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms