Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
LDB3O75112 SNORD1A-201ENST00000364968 72 ntBASIC1.4□□□□□ -2.19
LDB3O75112 RNU6-147P-201ENST00000383983 107 ntBASIC1.4□□□□□ -2.19
LDB3O75112 MIR136-201ENST00000385207 82 ntBASIC1.4□□□□□ -2.19
LDB3O75112 AL512326.2-201ENST00000426359 151 ntBASIC1.4□□□□□ -2.19
LDB3O75112 AL354695.1-201ENST00000427935 228 ntBASIC1.4□□□□□ -2.19
LDB3O75112 RNU7-164P-201ENST00000459221 62 ntBASIC1.4□□□□□ -2.19
LDB3O75112 RNA5SP445-201ENST00000515889 115 ntBASIC1.4□□□□□ -2.19
LDB3O75112 AC007012.1-201ENST00000567192 175 ntBASIC1.4□□□□□ -2.19
LDB3O75112 Y_RNA.171-201ENST00000363760 102 ntBASIC1.39□□□□□ -2.19
LDB3O75112 Y_RNA.370-201ENST00000365589 108 ntBASIC1.39□□□□□ -2.19
LDB3O75112 RNU6-880P-201ENST00000384526 107 ntBASIC1.39□□□□□ -2.19
LDB3O75112 MIR653-201ENST00000385279 96 ntBASIC1.39□□□□□ -2.19
LDB3O75112 SNORA26.6-201ENST00000391256 115 ntBASIC1.39□□□□□ -2.19
LDB3O75112 POLR2J4-204ENST00000418424 324 ntBASIC1.39□□□□□ -2.19
LDB3O75112 HMGN1P33-201ENST00000432945 451 ntBASIC1.39□□□□□ -2.19
LDB3O75112 COX6CP6-201ENST00000490840 228 ntBASIC1.39□□□□□ -2.19
LDB3O75112 AC079140.2-201ENST00000506193 142 ntBASIC1.39□□□□□ -2.19
LDB3O75112 RNU7-70P-201ENST00000516941 66 ntBASIC1.39□□□□□ -2.19
LDB3O75112 RNU6-958P-201ENST00000516995 106 ntBASIC1.39□□□□□ -2.19
LDB3O75112 MIR4305-201ENST00000583252 102 ntBASIC1.39□□□□□ -2.19
LDB3O75112 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.39□□□□□ -2.19
LDB3O75112 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.39□□□□□ -2.19
LDB3O75112 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.39□□□□□ -2.19
LDB3O75112 MIR450A1-201ENST00000362262 91 ntBASIC1.38□□□□□ -2.19
LDB3O75112 Y_RNA.344-201ENST00000365381 112 ntBASIC1.38□□□□□ -2.19
LDB3O75112 RNA5SP144-201ENST00000410846 116 ntBASIC1.38□□□□□ -2.19
LDB3O75112 RNA5SP136-201ENST00000410906 107 ntBASIC1.38□□□□□ -2.19
LDB3O75112 AL035398.1-201ENST00000430869 322 ntBASIC1.38□□□□□ -2.19
LDB3O75112 AC027119.1-201ENST00000440877 241 ntBASIC1.38□□□□□ -2.19
LDB3O75112 MIR1270-201ENST00000459320 83 ntBASIC1.38□□□□□ -2.19
LDB3O75112 RNU7-96P-201ENST00000459535 64 ntBASIC1.38□□□□□ -2.19
LDB3O75112 RNU7-80P-201ENST00000459562 61 ntBASIC1.38□□□□□ -2.19
LDB3O75112 SNORA31.24-201ENST00000517232 57 ntBASIC1.38□□□□□ -2.19
LDB3O75112 MIR3613-201ENST00000579844 87 ntBASIC1.38□□□□□ -2.19
LDB3O75112 AL513534.2-201ENST00000603836 250 ntBASIC1.38□□□□□ -2.19
LDB3O75112 AC021613.1-201ENST00000623880 111 ntBASIC1.38□□□□□ -2.19
LDB3O75112 RNU6-1298P-201ENST00000362456 101 ntBASIC1.37□□□□□ -2.19
LDB3O75112 Y_RNA.116-201ENST00000363292 103 ntBASIC1.37□□□□□ -2.19
LDB3O75112 Y_RNA.140-201ENST00000363474 103 ntBASIC1.37□□□□□ -2.19
LDB3O75112 Y_RNA.198-201ENST00000364013 98 ntBASIC1.37□□□□□ -2.19
LDB3O75112 SNORA24-201ENST00000384096 131 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNU6-106P-201ENST00000384405 107 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNU4-62P-201ENST00000410125 130 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNU6-554P-201ENST00000410466 106 ntBASIC1.37□□□□□ -2.19
LDB3O75112 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.37□□□□□ -2.19
LDB3O75112 RNU6-322P-201ENST00000516010 103 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNU6-902P-201ENST00000517212 91 ntBASIC1.37□□□□□ -2.19
LDB3O75112 MIR4791-201ENST00000607666 84 ntBASIC1.37□□□□□ -2.19
LDB3O75112 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.37□□□□□ -2.19
LDB3O75112 RNA5SP432-201ENST00000362480 116 ntBASIC1.36□□□□□ -2.19
LDB3O75112 SNORA63.5-201ENST00000363548 123 ntBASIC1.36□□□□□ -2.19
LDB3O75112 Y_RNA.281-201ENST00000364774 94 ntBASIC1.36□□□□□ -2.19
LDB3O75112 Y_RNA.362-201ENST00000365518 110 ntBASIC1.36□□□□□ -2.19
LDB3O75112 Y_RNA.470-201ENST00000384307 117 ntBASIC1.36□□□□□ -2.19
LDB3O75112 SNORD12C-201ENST00000386307 89 ntBASIC1.36□□□□□ -2.19
LDB3O75112 AC090844.1-201ENST00000422019 156 ntBASIC1.36□□□□□ -2.19
LDB3O75112 AC108667.1-201ENST00000428618 249 ntBASIC1.36□□□□□ -2.19
LDB3O75112 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.36□□□□□ -2.19
LDB3O75112 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.36□□□□□ -2.19
LDB3O75112 RNA5SP458-201ENST00000516188 119 ntBASIC1.36□□□□□ -2.19
LDB3O75112 SNORA74.3-201ENST00000517108 154 ntBASIC1.36□□□□□ -2.19
LDB3O75112 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.36□□□□□ -2.19
LDB3O75112 AC243994.1-201ENST00000618627 109 ntBASIC1.36□□□□□ -2.19
LDB3O75112 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.36□□□□□ -2.19
LDB3O75112 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
LDB3O75112 Y_RNA.85-201ENST00000363014 111 ntBASIC1.35□□□□□ -2.19
LDB3O75112 RNU6-1107P-201ENST00000364817 104 ntBASIC1.35□□□□□ -2.19
LDB3O75112 Y_RNA.454-201ENST00000384224 113 ntBASIC1.35□□□□□ -2.19
LDB3O75112 SNORD41-201ENST00000386967 70 ntBASIC1.35□□□□□ -2.19
LDB3O75112 AL451046.2-201ENST00000403074 277 ntBASIC1.35□□□□□ -2.19
LDB3O75112 RPS29P29-201ENST00000456396 171 ntBASIC1.35□□□□□ -2.19
LDB3O75112 RNU7-67P-201ENST00000459003 62 ntBASIC1.35□□□□□ -2.19
LDB3O75112 RNU7-41P-201ENST00000515917 61 ntBASIC1.35□□□□□ -2.19
LDB3O75112 RNU6-970P-201ENST00000516312 107 ntBASIC1.35□□□□□ -2.19
LDB3O75112 AC019176.1-201ENST00000518519 225 ntBASIC1.35□□□□□ -2.19
LDB3O75112 AC004812.1-201ENST00000540773 146 ntBASIC1.35□□□□□ -2.19
LDB3O75112 DNAJC19P9-201ENST00000555084 351 ntBASIC1.35□□□□□ -2.19
LDB3O75112 MIR3937-201ENST00000580135 106 ntBASIC1.35□□□□□ -2.19
LDB3O75112 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.35□□□□□ -2.19
LDB3O75112 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.35□□□□□ -2.19
LDB3O75112 MIR6841-201ENST00000637129 72 ntBASIC1.35□□□□□ -2.19
LDB3O75112 AP000648.3-201ENST00000623539 4507 ntBASIC1.35□□□□□ -2.19
LDB3O75112 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.35□□□□□ -2.19
LDB3O75112 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
LDB3O75112 MIR302B-201ENST00000362188 73 ntBASIC1.34□□□□□ -2.19
LDB3O75112 RNU6-1065P-201ENST00000384513 106 ntBASIC1.34□□□□□ -2.19
LDB3O75112 SNORA19.1-201ENST00000410656 129 ntBASIC1.34□□□□□ -2.19
LDB3O75112 RPS27P16-201ENST00000425758 201 ntBASIC1.34□□□□□ -2.19
LDB3O75112 snoU13.25-201ENST00000458945 104 ntBASIC1.34□□□□□ -2.19
LDB3O75112 MIR4764-201ENST00000580680 88 ntBASIC1.34□□□□□ -2.19
LDB3O75112 AL020996.3-201ENST00000606617 222 ntBASIC1.34□□□□□ -2.19
LDB3O75112 Y_RNA.773-201ENST00000607168 90 ntBASIC1.34□□□□□ -2.19
LDB3O75112 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.34□□□□□ -2.19
LDB3O75112 AC087741.2-201ENST00000619415 172 ntBASIC1.34□□□□□ -2.19
LDB3O75112 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.34□□□□□ -2.19
LDB3O75112 RNU6-1319P-201ENST00000390855 104 ntBASIC1.33□□□□□ -2.2
LDB3O75112 RNU6-747P-201ENST00000390928 104 ntBASIC1.33□□□□□ -2.2
LDB3O75112 RNU6-241P-201ENST00000391148 104 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms