Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR8074-201ENST00000615081 81 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 AL157834.3-201ENST00000615543 103 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 AL137067.1-201ENST00000615933 120 ntBASIC1.3□□□□□ -2.2
LMX1BO60663 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.3□□□□□ -2.2
LMX1BO60663 MIR342-201ENST00000362212 99 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 Y_RNA.273-201ENST00000364703 102 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNU6-215P-201ENST00000365169 102 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 SNORA1.2-201ENST00000365189 134 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNA5SP259-201ENST00000365541 109 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 SNORD20-201ENST00000384550 80 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 MIR934-201ENST00000401241 83 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 AL035398.1-201ENST00000430869 322 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1BO60663 SNORD33.1-201ENST00000516213 88 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNU6-970P-201ENST00000516312 107 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNU2-35P-201ENST00000516446 142 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNU6-1061P-201ENST00000516530 99 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 RNU6-1258P-201ENST00000516911 111 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 AC133485.4-201ENST00000561835 220 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 AC138907.4-201ENST00000570107 226 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 MIR4764-201ENST00000580680 88 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 MIR4285-201ENST00000581001 85 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 AL359881.1-201ENST00000602916 267 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 MIR8055-201ENST00000610739 97 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 AC243994.1-201ENST00000618627 109 ntBASIC1.29□□□□□ -2.2
LMX1BO60663 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
LMX1BO60663 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
LMX1BO60663 Y_RNA.537-201ENST00000384626 109 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 RNU6-1104P-201ENST00000384723 104 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 MIR1276-201ENST00000408707 83 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 RNU6-955P-201ENST00000410497 104 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 POLR2J4-204ENST00000418424 324 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 SNX2P2-201ENST00000424553 323 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 RNU7-41P-201ENST00000515917 61 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 RNU6-958P-201ENST00000516995 106 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 SNORA31.24-201ENST00000517232 57 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 MIR4421-201ENST00000578133 69 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 AC025166.1-201ENST00000612411 163 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 MTND5P18-201ENST00000445624 1801 ntBASIC1.28□□□□□ -2.2
LMX1BO60663 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
LMX1BO60663 RNU6-834P-201ENST00000362367 110 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 RNU4-16P-201ENST00000364737 141 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 Y_RNA.298-201ENST00000364960 107 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 SNORD1A-201ENST00000364968 72 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 RNU6-690P-201ENST00000365242 106 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 Y_RNA.454-201ENST00000384224 113 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 MIR489-201ENST00000384923 84 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 MIR1263-201ENST00000408324 86 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 RNA5SP144-201ENST00000410846 116 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 AL354695.1-201ENST00000427935 228 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 RNU7-73P-201ENST00000458743 63 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 RNU7-43P-201ENST00000516554 64 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 MIR3198-2-201ENST00000577868 80 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 MIR3192-201ENST00000584920 77 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 AL513534.2-201ENST00000603836 250 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 AL020996.3-201ENST00000606617 222 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 AL096861.1-201ENST00000610899 123 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
LMX1BO60663 AC021613.1-201ENST00000623880 111 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 MIR6841-201ENST00000637129 72 ntBASIC1.27□□□□□ -2.21
LMX1BO60663 Y_RNA.191-201ENST00000363972 113 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-1144P-201ENST00000384247 104 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 MIR520C-201ENST00000385005 87 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-1319P-201ENST00000390855 104 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-747P-201ENST00000390928 104 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-241P-201ENST00000391148 104 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-177P-201ENST00000411257 104 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU7-67P-201ENST00000459003 62 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 AC107297.1-201ENST00000459991 176 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU7-123P-201ENST00000515911 60 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNY4P20-201ENST00000516678 93 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 RNU6-922P-201ENST00000516753 99 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 SNORA44.1-201ENST00000517031 108 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 MIR4305-201ENST00000583252 102 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 AC008133.2-201ENST00000624540 351 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 U6.95-201ENST00000636931 70 ntBASIC1.26□□□□□ -2.21
LMX1BO60663 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.26□□□□□ -2.21
LMX1BO60663 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LMX1BO60663 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LMX1BO60663 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.25□□□□□ -2.21
LMX1BO60663 Y_RNA.528-201ENST00000384575 108 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 RNU6-476P-201ENST00000384726 107 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 MIR30A-201ENST00000385092 71 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 MIR1302-7-201ENST00000408841 72 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 RNU6-1064P-201ENST00000410626 104 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 HMGN1P33-201ENST00000432945 451 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 RNU7-70P-201ENST00000516941 66 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 AC022523.2-201ENST00000561045 150 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 MIR548AO-201ENST00000579992 96 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 AC021443.1-201ENST00000604478 211 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 MIR6129-201ENST00000616087 109 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 MIR6717-201ENST00000622747 73 ntBASIC1.25□□□□□ -2.21
LMX1BO60663 RNU6-1325P-201ENST00000364905 105 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 Y_RNA.466-201ENST00000384294 113 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 SNORA51.10-201ENST00000384418 136 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 AL451046.2-201ENST00000403074 277 ntBASIC1.24□□□□□ -2.21
LMX1BO60663 RNA5SP136-201ENST00000410906 107 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms