Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MIR4771-2-201ENST00000577758 74 ntBASIC0.78□□□□□ -2.28
NPHP1O15259 MIR4771-1-201ENST00000582617 74 ntBASIC0.78□□□□□ -2.28
NPHP1O15259 SNORD38B-202ENST00000625943 69 ntBASIC0.78□□□□□ -2.28
NPHP1O15259 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
NPHP1O15259 RNU6-103P-201ENST00000363686 107 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 RNY4P28-201ENST00000365281 93 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 RNU6-728P-201ENST00000365375 104 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 RNU6-1189P-201ENST00000383958 107 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 SNORA1-201ENST00000384107 130 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 Y_RNA.440-201ENST00000384120 114 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 MIR520F-201ENST00000384824 87 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 SNORD77.3-201ENST00000391113 65 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 SNORD58.1-201ENST00000391313 66 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 AC015818.7-201ENST00000428754 109 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 HMGN1P33-201ENST00000432945 451 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 AC087499.7-201ENST00000441958 109 ntBASIC0.77□□□□□ -2.29
NPHP1O15259 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.77□□□□□ -2.29
NPHP1O15259 MIR573-201ENST00000384964 99 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNA5SP193-201ENST00000410353 107 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNU4-43P-201ENST00000410628 137 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNA5SP222-201ENST00000411039 105 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNU7-96P-201ENST00000459535 64 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 MTND1P19-201ENST00000511780 315 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNU6-998P-201ENST00000515894 101 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 RNU6-977P-201ENST00000516411 103 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.76□□□□□ -2.29
NPHP1O15259 uc_338.6-201ENST00000613544 171 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 MIR6740-201ENST00000618268 113 ntBASIC0.76□□□□□ -2.29
NPHP1O15259 Y_RNA.20-201ENST00000362479 113 ntBASIC0.75□□□□□ -2.29
NPHP1O15259 Y_RNA.539-201ENST00000384635 107 ntBASIC0.75□□□□□ -2.29
NPHP1O15259 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.75□□□□□ -2.29
NPHP1O15259 RNY3P16-201ENST00000516338 101 ntBASIC0.75□□□□□ -2.29
NPHP1O15259 MIR4744-201ENST00000581563 82 ntBASIC0.75□□□□□ -2.29
NPHP1O15259 RNA5SP457-201ENST00000363657 124 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 SNORD27-201ENST00000363981 72 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 RNU6-716P-201ENST00000365621 103 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 Y_RNA.542-201ENST00000384641 111 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 MIR520H-201ENST00000385126 88 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 AL138752.1-201ENST00000452964 351 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 RNU2-11P-201ENST00000459191 187 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 RNA5SP330-201ENST00000517096 96 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 MIR4804-201ENST00000581683 73 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 MIR4676-201ENST00000583078 72 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 AC020891.4-201ENST00000605745 93 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 MIR376A2-201ENST00000636782 80 ntBASIC0.74□□□□□ -2.29
NPHP1O15259 SNORA1.1-201ENST00000364671 133 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 Y_RNA.308-201ENST00000365043 101 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 Y_RNA.350-201ENST00000365409 98 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 Y_RNA.477-201ENST00000384352 108 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 SNORA79-201ENST00000408376 140 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 MIR548I3-201ENST00000408378 149 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 RNU6-602P-201ENST00000411155 105 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 RNU6-177P-201ENST00000411257 104 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.73□□□□□ -2.29
NPHP1O15259 AL118496.2-201ENST00000448300 230 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 RNU4-54P-201ENST00000516428 129 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 AC062037.2-201ENST00000610137 73 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 MIR8087-201ENST00000612745 78 ntBASIC0.73□□□□□ -2.29
NPHP1O15259 AL589743.1-201ENST00000551932 2712 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 Y_RNA.65-201ENST00000362846 100 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 Y_RNA.478-201ENST00000384358 107 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
NPHP1O15259 MTND3P2-201ENST00000438452 342 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 AC018659.1-201ENST00000551083 169 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 MIR3129-201ENST00000581095 76 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
NPHP1O15259 AC010332.2-201ENST00000613083 1904 ntBASIC0.72□□□□□ -2.29
NPHP1O15259 Y_RNA.7-201ENST00000362352 102 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 RNU6-1292P-201ENST00000383856 107 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 RNU6-578P-201ENST00000390980 103 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 RNU6-493P-201ENST00000391321 108 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 RNU6-1190P-201ENST00000410811 104 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 Y_RNA.626-201ENST00000411288 95 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 AC092628.1-201ENST00000436250 252 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 AL121914.1-201ENST00000450188 156 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 MIR18B-201ENST00000454574 71 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.71□□□□□ -2.3
NPHP1O15259 RNA5SP121-201ENST00000516537 101 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 MIR3128-201ENST00000581957 66 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 MIR5197-201ENST00000583721 112 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 AL365205.2-201ENST00000594586 68 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 U4.1-201ENST00000620349 87 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 AC099654.10-201ENST00000640395 161 ntBASIC0.71□□□□□ -2.3
NPHP1O15259 Y_RNA.121-201ENST00000363309 113 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 Y_RNA.351-201ENST00000365436 96 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 RNY1P8-201ENST00000383970 114 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 SNORA36.2-201ENST00000384004 127 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 MIR588-201ENST00000384900 83 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 RNU6-1165P-201ENST00000410119 107 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 RNU6-733P-201ENST00000410759 104 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 Y_RNA.618-201ENST00000410949 107 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 snoU13.2-201ENST00000459201 104 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 Y_RNA.680-201ENST00000516441 93 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 RNU2-4P-201ENST00000606190 192 ntBASIC0.7□□□□□ -2.3
NPHP1O15259 MIR342-201ENST00000362212 99 ntBASIC0.69□□□□□ -2.3
NPHP1O15259 Y_RNA.258-201ENST00000364613 105 ntBASIC0.69□□□□□ -2.3
NPHP1O15259 RNU7-56P-201ENST00000458744 62 ntBASIC0.69□□□□□ -2.3
NPHP1O15259 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
NPHP1O15259 AC004817.2-201ENST00000561794 651 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 249 ms