Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU6-756P-201ENST00000383997 107 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SUMO2P12-201ENST00000405924 140 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU4-69P-201ENST00000410677 143 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RPS3AP1-201ENST00000413190 320 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 snoU13.26-201ENST00000459452 105 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU7-41P-201ENST00000515917 61 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNA5SP33-201ENST00000516687 98 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR4419B-201ENST00000577260 68 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC015688.6-201ENST00000577737 104 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR8081-201ENST00000611533 95 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORD115-19-201ENST00000363098 82 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORD115-18-201ENST00000363293 82 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORD115-17-201ENST00000364612 82 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORA1.1-201ENST00000364671 133 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORA51.5-201ENST00000384126 131 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORD41-201ENST00000386967 70 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-816P-201ENST00000390914 107 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-1268P-201ENST00000391214 107 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-1239P-201ENST00000391310 107 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-922P-201ENST00000516753 99 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR548AE2-201ENST00000583456 67 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR8074-201ENST00000615081 81 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR4251-201ENST00000635819 61 ntBASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR583-201ENST00000384846 75 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 HMGN2P19-201ENST00000425149 265 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RPL39P25-201ENST00000449384 154 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR1270-201ENST00000459320 83 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-537P-201ENST00000517277 103 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR548AO-201ENST00000579992 96 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR3618-201ENST00000580330 88 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.773-201ENST00000607168 90 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR1255B1-201ENST00000636325 63 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 Z97988.1-201ENST00000637697 135 ntBASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR17-201ENST00000385012 84 ntBASIC1.98□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNA5SP170-201ENST00000517150 101 ntBASIC1.98□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR1912-201ENST00000410389 80 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RN7SL274P-201ENST00000492268 272 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNA5SP182-201ENST00000516064 82 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.677-201ENST00000516401 85 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORD111.1-201ENST00000516421 86 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC103810.8-201ENST00000607347 118 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC084768.2-201ENST00000622736 221 ntBASIC1.97□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-1113P-201ENST00000384348 107 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-602P-201ENST00000411155 105 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC090844.1-201ENST00000422019 156 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR514B-201ENST00000516774 80 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-295P-201ENST00000516901 104 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR8065-201ENST00000620577 100 ntBASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.96□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 SNORA32-201ENST00000384072 121 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 SNORD77B-201ENST00000391112 67 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 SNORA19.1-201ENST00000410656 129 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR4298-201ENST00000584380 73 ntBASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-363P-201ENST00000362895 105 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 SNORD48-201ENST00000364953 64 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-616P-201ENST00000384353 107 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.507-201ENST00000384500 99 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR590-201ENST00000385008 97 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC245047.7-201ENST00000440265 293 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC009474.2-201ENST00000451383 136 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-250P-201ENST00000516958 103 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC141557.1-201ENST00000540982 400 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 CYP3A52P-201ENST00000563326 91 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR3192-201ENST00000584920 77 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AL096861.1-201ENST00000610899 123 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AP001318.4-201ENST00000616637 121 ntBASIC1.94□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.43-201ENST00000362670 111 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.78-201ENST00000362970 110 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU4-67P-201ENST00000364569 141 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.348-201ENST00000365403 103 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-342P-201ENST00000384521 104 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC005908.1-201ENST00000468701 347 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AC012493.3-201ENST00000604494 112 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 GHRLOS.1-201ENST00000610995 70 ntBASIC1.93□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.155-201ENST00000363632 101 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNA5SP48-201ENST00000363969 126 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-409P-201ENST00000384114 104 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 HMGN2P23-201ENST00000456759 269 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 RNU6-904P-201ENST00000516206 101 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.694-201ENST00000516677 117 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 AL357312.1-201ENST00000603879 298 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR8063-201ENST00000621930 81 ntBASIC1.92□□□□□ -2.1
NPHP3-ACAD11A0A0J9YXS1 MIR302D-201ENST00000362275 68 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms