Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SNORD28B-201ENST00000390993 75 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-1054P-201ENST00000411293 104 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 AC087499.4-201ENST00000448505 178 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-971P-201ENST00000516920 106 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 MIR3658-201ENST00000636291 56 ntBASIC2.15□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.261-201ENST00000364631 102 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.353-201ENST00000365440 108 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 SNORD116-14-201ENST00000383894 92 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 SNORD116-17-201ENST00000383929 92 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 SNORD116-15-201ENST00000384445 92 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 SNORD20-201ENST00000384550 80 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 SNORD116-19-201ENST00000384729 92 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 MIR518F-201ENST00000384973 87 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 RNU4-43P-201ENST00000410628 137 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 AC245047.7-201ENST00000440265 293 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 AC048334.1-201ENST00000477975 159 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 RNU7-41P-201ENST00000515917 61 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 MIR3192-201ENST00000584920 77 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 AL359881.1-201ENST00000602916 267 ntBASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.66-201ENST00000362862 102 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.71-201ENST00000362892 104 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.218-201ENST00000364218 104 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-215P-201ENST00000365169 102 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 AC006461.1-201ENST00000412637 326 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 AL133373.1-201ENST00000497098 94 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-1333P-201ENST00000516162 93 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 AC007751.1-201ENST00000529260 376 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 AC112693.2-201ENST00000556538 232 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 MIR3935-201ENST00000583472 104 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 TUG1_4.1-201ENST00000619464 181 ntBASIC2.13□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.241-201ENST00000364470 117 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-53P-201ENST00000365367 106 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-643P-201ENST00000384018 107 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.420-201ENST00000384043 110 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 SNORA20-201ENST00000384662 132 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 SNORD37.2-201ENST00000391075 66 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 MIR1323-201ENST00000408090 73 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 AC134878.1-201ENST00000619901 243 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 AL353770.2-201ENST00000620024 78 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 MIR4251-201ENST00000635819 61 ntBASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
CCDC9Q9Y3X0 SNORA51.10-201ENST00000384418 136 ntBASIC2.11□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.542-201ENST00000384641 111 ntBASIC2.11□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-1211P-201ENST00000459179 105 ntBASIC2.11□□□□□ -2.07
CCDC9Q9Y3X0 MIR3646-201ENST00000578301 84 ntBASIC2.11□□□□□ -2.07
CCDC9Q9Y3X0 MIR3618-201ENST00000580330 88 ntBASIC2.11□□□□□ -2.07
CCDC9Q9Y3X0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 RNA5SP327-201ENST00000362494 101 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.37-201ENST00000362606 108 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 MIR548A2-201ENST00000384956 97 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 MIR222-201ENST00000384992 110 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 RNU7-197P-201ENST00000458836 62 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-919P-201ENST00000516731 104 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 AC022709.1-201ENST00000615967 87 ntBASIC2.1□□□□□ -2.07
CCDC9Q9Y3X0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-34-201ENST00000362441 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-12-201ENST00000362583 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-29-201ENST00000362834 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-9-201ENST00000362912 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-21-201ENST00000362963 81 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-14-201ENST00000363090 81 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-13-201ENST00000363358 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-41-201ENST00000363608 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-11-201ENST00000363616 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-5-201ENST00000363633 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-39-201ENST00000363694 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-4-201ENST00000363810 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-16-201ENST00000363887 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-6-201ENST00000363942 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-42-201ENST00000364273 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-15-201ENST00000364809 81 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-1-201ENST00000364961 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-26-201ENST00000365067 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-10-201ENST00000365073 81 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-43-201ENST00000365503 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-36-201ENST00000365629 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-80P-201ENST00000384195 107 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 Y_RNA.537-201ENST00000384626 109 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 MIR570-201ENST00000384917 97 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 AL035461.1-201ENST00000421490 332 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 RNU6-1234P-201ENST00000516877 103 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORA70.22-201ENST00000517160 124 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORA31.24-201ENST00000517232 57 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 AP003484.1-201ENST00000530974 250 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 AC019288.1-201ENST00000557918 224 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 SNORD115-40-201ENST00000606510 82 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 MIR6844-201ENST00000637122 62 ntBASIC2.09□□□□□ -2.07
CCDC9Q9Y3X0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
CCDC9Q9Y3X0 RNU6-834P-201ENST00000362367 110 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 SNORA70.7-201ENST00000384159 133 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 Y_RNA.521-201ENST00000384560 114 ntBASIC2.08□□□□□ -2.08
CCDC9Q9Y3X0 MIR517C-201ENST00000385103 95 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 240.7 ms