Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL035398.1-201ENST00000430869 322 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RPS29P29-201ENST00000456396 171 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 AC108729.3-201ENST00000513484 108 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 SNORD111.1-201ENST00000516421 86 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RNU7-53P-201ENST00000516705 60 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-1149P-201ENST00000516810 97 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 SCARNA15-202ENST00000516881 127 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 SNORA31.24-201ENST00000517232 57 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 AC011603.4-201ENST00000611325 277 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 AC243994.1-201ENST00000618627 109 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 AL121890.5-201ENST00000620848 304 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 AC008133.2-201ENST00000624540 351 ntBASIC1.69□□□□□ -2.14
LIMCH1Q9UPQ0 RNU1-17P-201ENST00000363022 152 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 SNORA51.10-201ENST00000384418 136 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 RNU7-67P-201ENST00000459003 62 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-1211P-201ENST00000459179 105 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 SNORD13-201ENST00000459299 104 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-998P-201ENST00000515894 101 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.692-201ENST00000516627 105 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 MIR4791-201ENST00000607666 84 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 MIR376A2-201ENST00000636782 80 ntBASIC1.68□□□□□ -2.14
LIMCH1Q9UPQ0 U8.1-201ENST00000362843 134 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.140-201ENST00000363474 103 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 RNA5SP48-201ENST00000363969 126 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 AL603914.1-201ENST00000401964 204 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 MIR1287-201ENST00000408492 90 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-955P-201ENST00000410497 104 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-970P-201ENST00000516312 107 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-971P-201ENST00000516920 106 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 AL512310.8-201ENST00000550183 120 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.757-201ENST00000578934 114 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 AP000942.3-201ENST00000603702 160 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 AL645939.4-201ENST00000604495 135 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 U7.2-201ENST00000607576 63 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 MTND5P32-201ENST00000560711 1802 ntBASIC1.67□□□□□ -2.14
LIMCH1Q9UPQ0 MIR302B-201ENST00000362188 73 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 RNU1-133P-201ENST00000364867 167 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-22P-201ENST00000384355 107 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 Y_RNA.494-201ENST00000384432 111 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 snoU13.16-201ENST00000459350 104 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-1053P-201ENST00000515930 101 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 MIR3121-201ENST00000579680 77 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 MIR548AI-201ENST00000579940 88 ntBASIC1.66□□□□□ -2.14
LIMCH1Q9UPQ0 RNU6-1081P-201ENST00000384537 107 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 RNU7-73P-201ENST00000458743 63 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 AL133373.1-201ENST00000497098 94 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-947P-201ENST00000516264 106 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.686-201ENST00000516548 134 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.690-201ENST00000516603 95 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-958P-201ENST00000516995 106 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 MIR4251-201ENST00000635819 61 ntBASIC1.65□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.71-201ENST00000362892 104 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.291-201ENST00000364886 113 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 RNA5SP261-201ENST00000410536 106 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 RPS27P16-201ENST00000425758 201 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-479P-201ENST00000516348 105 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 RNU2-60P-201ENST00000517290 128 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 MIR7974-201ENST00000615835 79 ntBASIC1.64□□□□□ -2.15
LIMCH1Q9UPQ0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-309P-201ENST00000364573 106 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-80P-201ENST00000384195 107 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 SNORA67.5-201ENST00000391036 107 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 AC008267.6-201ENST00000441664 139 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 RNU7-41P-201ENST00000515917 61 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 RNA5SP236-201ENST00000516169 116 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-113P-201ENST00000516653 101 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 MIR4498-201ENST00000577599 66 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 AL096861.1-201ENST00000610899 123 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 AC091932.4-201ENST00000623386 200 ntBASIC1.63□□□□□ -2.15
LIMCH1Q9UPQ0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 MIR342-201ENST00000362212 99 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.118-201ENST00000363300 101 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.218-201ENST00000364218 104 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 MIR570-201ENST00000384917 97 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-1168P-201ENST00000390831 104 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 RNU2-11P-201ENST00000459191 187 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 RN7SKP88-201ENST00000516847 250 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 7SK.8-201ENST00000612110 250 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 7SK.11-201ENST00000615477 250 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 7SK.13-201ENST00000622040 250 ntBASIC1.62□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.127-201ENST00000363386 109 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 MIR758-201ENST00000390227 88 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-1154P-201ENST00000391001 104 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 AL158147.1-201ENST00000443970 75 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 RNU6-313P-201ENST00000516317 112 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 DNAJC19P9-201ENST00000555084 351 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 AL022345.2-201ENST00000606307 135 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 AL365222.1-201ENST00000614661 98 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.61□□□□□ -2.15
LIMCH1Q9UPQ0 AL596211.1-201ENST00000569873 2277 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.114-201ENST00000363265 113 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 SNORD116-14-201ENST00000383894 92 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 SNORD116-17-201ENST00000383929 92 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 SNORD116-15-201ENST00000384445 92 ntBASIC1.6□□□□□ -2.15
LIMCH1Q9UPQ0 Y_RNA.508-201ENST00000384502 114 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms