Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.440-201ENST00000384120 114 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.539-201ENST00000384635 107 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.556-201ENST00000384677 113 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 SNORD77.3-201ENST00000391113 65 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 MIR1827-201ENST00000408549 66 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 HMGN1P33-201ENST00000432945 451 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 AL138752.1-201ENST00000452964 351 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 AC067940.1-201ENST00000458411 300 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 MIR151B-201ENST00000584249 96 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 AC023934.1-201ENST00000574529 2389 ntBASIC0.79□□□□□ -2.28
CPSF3Q9UKF6 RNU6-369P-201ENST00000362515 102 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 RNY4P28-201ENST00000365281 93 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.410-201ENST00000383992 113 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.477-201ENST00000384352 108 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 AC113410.1-201ENST00000505029 247 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 RNU7-53P-201ENST00000516705 60 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 AC025627.3-201ENST00000582078 182 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 Z97988.1-201ENST00000637697 135 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 AC099654.10-201ENST00000640395 161 ntBASIC0.78□□□□□ -2.28
CPSF3Q9UKF6 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-103P-201ENST00000363686 107 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.269-201ENST00000364685 89 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.308-201ENST00000365043 101 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-728P-201ENST00000365375 104 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-1189P-201ENST00000383958 107 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-110P-201ENST00000384508 104 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 SNORD58.1-201ENST00000391313 66 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 MIR1302-3-201ENST00000408128 138 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 SNORD99-201ENST00000408612 74 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU4-43P-201ENST00000410628 137 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-1190P-201ENST00000410811 104 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU7-96P-201ENST00000459535 64 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 RNU6-998P-201ENST00000515894 101 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.680-201ENST00000516441 93 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 SNORA4-201ENST00000584302 138 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 MIR6835-201ENST00000621552 64 ntBASIC0.77□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.20-201ENST00000362479 113 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 AL118496.2-201ENST00000448300 230 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 RNU2-11P-201ENST00000459191 187 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.673-201ENST00000516306 88 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 MIR3129-201ENST00000581095 76 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 AL078603.1-201ENST00000603824 313 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 uc_338.6-201ENST00000613544 171 ntBASIC0.76□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.350-201ENST00000365409 98 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 RNU6-493P-201ENST00000391321 108 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 MIR548I3-201ENST00000408378 149 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 SNORD83.1-201ENST00000411362 77 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 AL606490.4-201ENST00000423117 127 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 MTND3P2-201ENST00000438452 342 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 MIR4744-201ENST00000581563 82 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 AC104465.1-201ENST00000611365 139 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 AL136317.1-201ENST00000612653 226 ntBASIC0.75□□□□□ -2.29
CPSF3Q9UKF6 MIR1-1-201ENST00000362147 71 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.7-201ENST00000362352 102 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.65-201ENST00000362846 100 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 SNORD38B-201ENST00000384690 67 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 MIR518E-201ENST00000385252 88 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 RNU6-602P-201ENST00000411155 105 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 RPS26P5-201ENST00000418544 335 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 AC015818.7-201ENST00000428754 109 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 AC087499.7-201ENST00000441958 109 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 RNU7-62P-201ENST00000458856 62 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 RNU6-1223P-201ENST00000517124 104 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 MIR4714-201ENST00000580728 77 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 MIR3128-201ENST00000581957 66 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 AL590095.2-201ENST00000604136 117 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 AC062037.2-201ENST00000610137 73 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 MIR6740-201ENST00000618268 113 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 SNORD38B-202ENST00000625943 69 ntBASIC0.74□□□□□ -2.29
CPSF3Q9UKF6 MIR342-201ENST00000362212 99 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 SNORA1.1-201ENST00000364671 133 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RNU6-923P-201ENST00000364753 107 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.542-201ENST00000384641 111 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 SNORD105-201ENST00000386910 85 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RNU6-578P-201ENST00000390980 103 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 SNORA79-201ENST00000408376 140 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 Y_RNA.626-201ENST00000411288 95 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 AL121914.1-201ENST00000450188 156 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 AC133485.1-201ENST00000567176 124 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 AC138907.6-201ENST00000568401 126 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 MIR5000-201ENST00000577717 103 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 MIR4308-201ENST00000580634 81 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 MIR5197-201ENST00000583721 112 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 AL365205.2-201ENST00000594586 68 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RNU2-4P-201ENST00000606190 192 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RMST_2.1-201ENST00000617263 136 ntBASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
CPSF3Q9UKF6 RNU6-934P-201ENST00000365154 107 ntBASIC0.72□□□□□ -2.29
CPSF3Q9UKF6 COX6CP6-201ENST00000490840 228 ntBASIC0.72□□□□□ -2.29
CPSF3Q9UKF6 RNA5SP220-201ENST00000516298 104 ntBASIC0.72□□□□□ -2.29
CPSF3Q9UKF6 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
CPSF3Q9UKF6 MIR4503-201ENST00000582187 83 ntBASIC0.72□□□□□ -2.29
CPSF3Q9UKF6 U4.1-201ENST00000620349 87 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms