Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SCARNA15-202ENST00000516881 127 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 RNU2-60P-201ENST00000517290 128 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.28□□□□□ -2.2
SIX4Q9UIU6 AC131055.1-201ENST00000584626 316 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 AL357312.1-201ENST00000603879 298 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 MIR4791-201ENST00000607666 84 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 AL121890.5-201ENST00000620848 304 ntBASIC1.28□□□□□ -2.2
SIX4Q9UIU6 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SIX4Q9UIU6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
SIX4Q9UIU6 RPL30P7-201ENST00000479312 323 ntBASIC1.27□□□□□ -2.21
SIX4Q9UIU6 RPS29P24-201ENST00000486345 171 ntBASIC1.27□□□□□ -2.21
SIX4Q9UIU6 RNU6-426P-201ENST00000516464 97 ntBASIC1.27□□□□□ -2.21
SIX4Q9UIU6 MIR548X2-201ENST00000579776 100 ntBASIC1.27□□□□□ -2.21
SIX4Q9UIU6 AP001485.1-201ENST00000604799 199 ntBASIC1.27□□□□□ -2.21
SIX4Q9UIU6 MIR342-201ENST00000362212 99 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 RNU6-187P-201ENST00000384139 106 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.488-201ENST00000384403 102 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 SNORA20-201ENST00000384662 132 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.584-201ENST00000391090 114 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 MIR513C-201ENST00000401352 84 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.26□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.686-201ENST00000516548 134 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.703-201ENST00000516846 111 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 AC243994.1-201ENST00000618627 109 ntBASIC1.26□□□□□ -2.21
SIX4Q9UIU6 SNORA24-201ENST00000384096 131 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 RNU6-746P-201ENST00000384112 109 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 SNORA51.10-201ENST00000384418 136 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.537-201ENST00000384626 109 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.25□□□□□ -2.21
SIX4Q9UIU6 RNU7-67P-201ENST00000459003 62 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 AC107297.1-201ENST00000459991 176 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 RNU6-998P-201ENST00000515894 101 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 RNA5SP236-201ENST00000516169 116 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 CYP3A52P-201ENST00000563326 91 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 MIR6078-201ENST00000611069 100 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SIX4Q9UIU6 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 AC091932.4-201ENST00000623386 200 ntBASIC1.25□□□□□ -2.21
SIX4Q9UIU6 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.24□□□□□ -2.21
SIX4Q9UIU6 RNU6-508P-201ENST00000363231 103 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.351-201ENST00000365436 96 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.420-201ENST00000384043 110 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 RPL39P39-201ENST00000455840 151 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 RNU7-96P-201ENST00000459535 64 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 SNORA31.4-201ENST00000516049 129 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 RNU6-958P-201ENST00000516995 106 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 MIR4251-201ENST00000635819 61 ntBASIC1.24□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.4-201ENST00000362333 112 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 SNORA25.3-201ENST00000363205 127 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 RNA5SP48-201ENST00000363969 126 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 SNORA70.7-201ENST00000384159 133 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 RNU6-913P-201ENST00000390913 95 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 MIR548M-201ENST00000408260 86 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 RNU2-11P-201ENST00000459191 187 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 AL596211.1-201ENST00000569873 2277 ntBASIC1.23□□□□□ -2.21
SIX4Q9UIU6 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.22□□□□□ -2.21
SIX4Q9UIU6 Y_RNA.120-201ENST00000363304 110 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 RNU6-915P-201ENST00000364943 103 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 RNU6-1067P-201ENST00000384752 107 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 RNU6-1190P-201ENST00000410811 104 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 AL035398.1-201ENST00000430869 322 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 MIR548AO-201ENST00000579992 96 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 MIR4781-201ENST00000585250 76 ntBASIC1.22□□□□□ -2.21
SIX4Q9UIU6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SIX4Q9UIU6 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.21□□□□□ -2.22
SIX4Q9UIU6 MIR26B-201ENST00000362251 77 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.568-201ENST00000384742 113 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 RNU7-73P-201ENST00000458743 63 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 RNU7-45P-201ENST00000459460 63 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 RNU7-80P-201ENST00000459562 61 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 AC048334.1-201ENST00000477975 159 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 RNU7-53P-201ENST00000516705 60 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 RNU7-70P-201ENST00000516941 66 ntBASIC1.21□□□□□ -2.22
SIX4Q9UIU6 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
SIX4Q9UIU6 RNY1P10-201ENST00000363268 113 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 RNU6-309P-201ENST00000364573 106 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 RNU1-133P-201ENST00000364867 167 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.343-201ENST00000365354 112 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 AL603908.1-201ENST00000406098 201 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 MIR1302-7-201ENST00000408841 72 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 AL591704.2-201ENST00000421658 181 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 HMGN1P33-201ENST00000432945 451 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.651-201ENST00000459380 103 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.690-201ENST00000516603 95 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 AP003716.2-201ENST00000528260 108 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 HSPE1P19-201ENST00000603327 295 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 AC091895.1-201ENST00000624494 256 ntBASIC1.2□□□□□ -2.22
SIX4Q9UIU6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SIX4Q9UIU6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SIX4Q9UIU6 AC010332.2-201ENST00000613083 1904 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 RNU4-16P-201ENST00000364737 141 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 Y_RNA.454-201ENST00000384224 113 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 AC090844.1-201ENST00000422019 156 ntBASIC1.19□□□□□ -2.22
SIX4Q9UIU6 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.19□□□□□ -2.22
SIX4Q9UIU6 snoU13.16-201ENST00000459350 104 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms