Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 SNORD24-201ENST00000383884 75 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 SNORD38B-201ENST00000384690 67 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 MIR588-201ENST00000384900 83 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 MT-TT-201ENST00000387460 66 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 MIR1197-201ENST00000408818 88 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-651P-201ENST00000411040 105 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-602P-201ENST00000411155 105 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 MTND4LP30-201ENST00000454092 297 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RPS29P24-201ENST00000486345 171 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 SERF1AP1-201ENST00000514575 187 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1338P-201ENST00000516328 91 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 RNU6-365P-201ENST00000517113 106 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 MIR4662B-201ENST00000579498 81 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 AL162730.1-201ENST00000605734 292 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 SNORD38B-202ENST00000625943 69 ntBASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.29□□□□□ -2.36
KLHL28Q9NXS3 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.30-201ENST00000362572 97 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 RNU4-45P-201ENST00000365469 141 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 RNU6-1289P-201ENST00000384431 106 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 MIR626-201ENST00000385032 94 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 SNORD12C-201ENST00000386307 89 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 AL731563.1-201ENST00000442202 214 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 RNU6-570P-201ENST00000517051 105 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 AP001094.1-201ENST00000579805 193 ntBASIC0.28□□□□□ -2.36
KLHL28Q9NXS3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
KLHL28Q9NXS3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.7-201ENST00000362352 102 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.152-201ENST00000363578 100 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.275-201ENST00000364726 110 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU6-484P-201ENST00000384016 107 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 SNORA8.3-201ENST00000384679 139 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 MIR938-201ENST00000401216 83 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1165P-201ENST00000410119 107 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1203P-201ENST00000410703 110 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.622-201ENST00000411091 108 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU2-11P-201ENST00000459191 187 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 snoU13.2-201ENST00000459201 104 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU7-53P-201ENST00000516705 60 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 RNU6-453P-201ENST00000516819 85 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 MIR376A2-201ENST00000636782 80 ntBASIC0.27□□□□□ -2.37
KLHL28Q9NXS3 MIR342-201ENST00000362212 99 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNA5SP457-201ENST00000363657 124 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 snoU2_19.4-201ENST00000364329 80 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 SNORA1.1-201ENST00000364671 133 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.634-201ENST00000364811 113 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU6-679P-201ENST00000391003 106 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1228P-201ENST00000391014 107 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 SNRPGP8-201ENST00000454064 226 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 MIR18B-201ENST00000454574 71 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU7-102P-201ENST00000458948 62 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU7-185P-201ENST00000459215 60 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU7-45P-201ENST00000459460 63 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU6-998P-201ENST00000515894 101 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 RNU6-504P-201ENST00000516568 104 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 MIR5688-201ENST00000580619 83 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 AP001282.2-201ENST00000616149 309 ntBASIC0.26□□□□□ -2.37
KLHL28Q9NXS3 SNORA63C-201ENST00000364578 129 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 RNU6-740P-201ENST00000364734 105 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.304-201ENST00000365011 112 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 SNORA1-201ENST00000384107 130 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.440-201ENST00000384120 114 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.512-201ENST00000384518 102 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 MIR563-201ENST00000385080 79 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 MIR125B2-201ENST00000385128 89 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 MIR548I3-201ENST00000408378 149 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1143P-201ENST00000516125 104 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1299P-201ENST00000516316 100 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 SNORA62.5-201ENST00000516634 120 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 AL109933.3-201ENST00000619095 188 ntBASIC0.25□□□□□ -2.37
KLHL28Q9NXS3 MIR30D-201ENST00000362283 70 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.23-201ENST00000362496 106 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.237-201ENST00000364439 102 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU6-597P-201ENST00000365620 102 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU6-1189P-201ENST00000383958 107 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU6-364P-201ENST00000384387 107 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 SNORD77.3-201ENST00000391113 65 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 SNORA26.6-201ENST00000391256 115 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU6-985P-201ENST00000410182 104 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU7-96P-201ENST00000459535 64 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 RNU7-156P-201ENST00000517214 74 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 AC090897.1-201ENST00000580909 226 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.24□□□□□ -2.37
KLHL28Q9NXS3 MIR103A1-201ENST00000362165 78 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 Y_RNA.44-201ENST00000362676 108 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 RNA5SP517-201ENST00000364724 117 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 AL606845.1-201ENST00000404881 255 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 MIR1257-201ENST00000408490 117 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 SNORD100-201ENST00000408573 76 ntBASIC0.23□□□□□ -2.37
KLHL28Q9NXS3 AC108740.1-201ENST00000498629 225 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms