Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 Y_RNA.618-201ENST00000410949 107 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 RNU6-602P-201ENST00000411155 105 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 AC130289.1-201ENST00000577321 73 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 uc_338.6-201ENST00000613544 171 ntBASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
CHMP1AQ9HD42 RNU6-369P-201ENST00000362515 102 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.75-201ENST00000362927 97 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.83-201ENST00000363005 113 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.140-201ENST00000363474 103 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 SNORA1.1-201ENST00000364671 133 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 Y_RNA.351-201ENST00000365436 96 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 SNORD38B-201ENST00000384690 67 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 MIR605-201ENST00000385078 83 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 MIR1827-201ENST00000408549 66 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 snoU13.23-201ENST00000458863 104 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 RNU6-1110P-201ENST00000516462 101 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 SNORD38B-202ENST00000625943 69 ntBASIC0.84□□□□□ -2.27
CHMP1AQ9HD42 MIR378A-201ENST00000362177 66 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.435-201ENST00000384095 112 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 MIR608-201ENST00000384820 100 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 SNORA26.6-201ENST00000391256 115 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 AC067940.1-201ENST00000458411 300 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 RNU7-45P-201ENST00000459460 63 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 AC015712.3-201ENST00000559380 164 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 MIR6740-201ENST00000618268 113 ntBASIC0.83□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.489-201ENST00000384410 101 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 SNORD83.1-201ENST00000411362 77 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 SEPT7P4-201ENST00000437076 306 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 MRPS18CP4-201ENST00000535821 231 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 AC211469.2-201ENST00000605461 205 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 AL353765.1-201ENST00000605514 183 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 AC091932.4-201ENST00000623386 200 ntBASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CHMP1AQ9HD42 RNA5SP99-201ENST00000364020 114 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 RNU4-38P-201ENST00000364472 129 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.274-201ENST00000364714 101 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 MIR146A-201ENST00000385201 99 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 AP1B1P2-201ENST00000416196 106 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 RNU7-62P-201ENST00000458856 62 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 AC113410.1-201ENST00000505029 247 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 SCARNA15-202ENST00000516881 127 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 Z83818.1-201ENST00000603584 150 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 MIR6717-201ENST00000622747 73 ntBASIC0.81□□□□□ -2.28
CHMP1AQ9HD42 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 MIR1-1-201ENST00000362147 71 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 MIR302B-201ENST00000362188 73 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RNU6-1020P-201ENST00000363684 107 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RNU6-379P-201ENST00000363813 104 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.188-201ENST00000363952 111 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RNU6-934P-201ENST00000365154 107 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 snosnR66.1-201ENST00000391095 99 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC006461.1-201ENST00000412637 326 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RPS26P5-201ENST00000418544 335 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC015818.7-201ENST00000428754 109 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC087499.7-201ENST00000441958 109 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RNU7-80P-201ENST00000459562 61 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 RNU6-1271P-201ENST00000517049 105 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC091895.1-201ENST00000624494 256 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AC023934.1-201ENST00000574529 2389 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 AL596211.1-201ENST00000569873 2277 ntBASIC0.8□□□□□ -2.28
CHMP1AQ9HD42 MIR588-201ENST00000384900 83 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 MIR624-201ENST00000385217 97 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 SNORD12C-201ENST00000386307 89 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 SNORD99-201ENST00000408612 74 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 RNA5SP127-201ENST00000411051 133 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 AC022559.1-201ENST00000520905 205 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 MIR4431-201ENST00000579990 94 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 AC025627.3-201ENST00000582078 182 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 AL136317.1-201ENST00000612653 226 ntBASIC0.79□□□□□ -2.28
CHMP1AQ9HD42 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 RNU6-1336P-201ENST00000383886 109 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.401-201ENST00000383965 117 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.454-201ENST00000384224 113 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 MIR100-201ENST00000385259 80 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 RNU2-64P-201ENST00000411315 191 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 snoU13.2-201ENST00000459201 104 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 PSMC1P5-201ENST00000512850 177 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 RNU6-1219P-201ENST00000516143 112 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 AC141273.2-201ENST00000618989 130 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 AC078938.1-201ENST00000620993 318 ntBASIC0.78□□□□□ -2.28
CHMP1AQ9HD42 Y_RNA.233-201ENST00000364407 101 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 MIR563-201ENST00000385080 79 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 SNORD105-201ENST00000386910 85 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 MT-TG-201ENST00000387429 68 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 RNU6-1319P-201ENST00000390855 104 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 RNU6-747P-201ENST00000390928 104 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 RNU6-241P-201ENST00000391148 104 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 RNU6-177P-201ENST00000411257 104 ntBASIC0.77□□□□□ -2.29
CHMP1AQ9HD42 RNU6-1149P-201ENST00000516810 97 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms