Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNU6-453P-201ENST00000516819 85 ntBASIC0.59□□□□□ -2.31
SSX3Q99909 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.59□□□□□ -2.31
SSX3Q99909 MIR8055-201ENST00000610739 97 ntBASIC0.59□□□□□ -2.31
SSX3Q99909 AL365265.1-201ENST00000621045 234 ntBASIC0.59□□□□□ -2.31
SSX3Q99909 Z97988.1-201ENST00000637697 135 ntBASIC0.59□□□□□ -2.31
SSX3Q99909 Y_RNA.7-201ENST00000362352 102 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 RNU6-369P-201ENST00000362515 102 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.176-201ENST00000363815 109 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.304-201ENST00000365011 112 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 MIR520F-201ENST00000384824 87 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 MIR508-201ENST00000384857 115 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 RNU6-733P-201ENST00000410759 104 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 RNA5SP222-201ENST00000411039 105 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 HMGN1P33-201ENST00000432945 451 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 RNU2-11P-201ENST00000459191 187 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 RNA5SP121-201ENST00000516537 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 MIR4714-201ENST00000580728 77 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 MIR4282-201ENST00000583613 67 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 AL590095.2-201ENST00000604136 117 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.812-201ENST00000610788 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.784-201ENST00000613803 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.787-201ENST00000616522 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.780-201ENST00000617336 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 Y_RNA.801-201ENST00000619005 101 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 uc_338.17-201ENST00000619633 179 ntBASIC0.58□□□□□ -2.32
SSX3Q99909 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.57□□□□□ -2.32
SSX3Q99909 MIR342-201ENST00000362212 99 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 Y_RNA.354-201ENST00000365448 111 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 Y_RNA.416-201ENST00000384014 113 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 MIR489-201ENST00000384923 84 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 MIR520H-201ENST00000385126 88 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 SNORD77.3-201ENST00000391113 65 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 MIR548I3-201ENST00000408378 149 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 AC015818.7-201ENST00000428754 109 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 AC087499.7-201ENST00000441958 109 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 RNU6-998P-201ENST00000515894 101 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 AC008737.2-201ENST00000599446 118 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 AC097639.2-201ENST00000603159 172 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 MIR7111-201ENST00000619751 72 ntBASIC0.57□□□□□ -2.32
SSX3Q99909 Y_RNA.54-201ENST00000362766 105 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 RNU6-1309P-201ENST00000363305 108 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 Y_RNA.145-201ENST00000363527 102 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 RNY1-201ENST00000364228 113 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 RNU4-17P-201ENST00000365598 141 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 SNORA79-201ENST00000408376 140 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 MIR548F4-201ENST00000408515 105 ntBASIC0.56□□□□□ -2.32
SSX3Q99909 MIR302B-201ENST00000362188 73 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 Y_RNA.262-201ENST00000364641 102 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 RNU6-728P-201ENST00000365375 104 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 Y_RNA.352-201ENST00000365439 102 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 RNU6-945P-201ENST00000383947 107 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 SNORA36.2-201ENST00000384004 127 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 Y_RNA.440-201ENST00000384120 114 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 RNU6-472P-201ENST00000384299 107 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 RNU6-381P-201ENST00000391259 108 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 RNU6-602P-201ENST00000411155 105 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 MIR4676-201ENST00000583078 72 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 MIR6740-201ENST00000618268 113 ntBASIC0.55□□□□□ -2.32
SSX3Q99909 AC010332.2-201ENST00000613083 1904 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
SSX3Q99909 Y_RNA.396-201ENST00000383949 103 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 SNORA1-201ENST00000384107 130 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 Y_RNA.518-201ENST00000384552 113 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 MIR588-201ENST00000384900 83 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 MIR573-201ENST00000384964 99 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 MIR18B-201ENST00000454574 71 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.54□□□□□ -2.32
SSX3Q99909 AL117187.1-201ENST00000555482 181 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 MIR4804-201ENST00000581683 73 ntBASIC0.54□□□□□ -2.32
SSX3Q99909 Y_RNA.23-201ENST00000362496 106 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 RNU6-653P-201ENST00000363074 106 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 Y_RNA.277-201ENST00000364754 102 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 RNU1-133P-201ENST00000364867 167 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 Y_RNA.351-201ENST00000365436 96 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
SSX3Q99909 RNU6-1165P-201ENST00000410119 107 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 RNU6-1190P-201ENST00000410811 104 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.53□□□□□ -2.32
SSX3Q99909 snoU13.2-201ENST00000459201 104 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 AC004812.1-201ENST00000540773 146 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.53□□□□□ -2.32
SSX3Q99909 AC020891.4-201ENST00000605745 93 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 AL442067.1-201ENST00000613261 223 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 uc_338.6-201ENST00000613544 171 ntBASIC0.53□□□□□ -2.32
SSX3Q99909 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
SSX3Q99909 Y_RNA.47-201ENST00000362697 108 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 Y_RNA.149-201ENST00000363558 117 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 RNU6-103P-201ENST00000363686 107 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 Y_RNA.459-201ENST00000384251 102 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 Y_RNA.542-201ENST00000384641 111 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 RNU6-1011P-201ENST00000384668 107 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 RNU6-561P-201ENST00000516222 102 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 MIR4643-201ENST00000577473 78 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 MIR3129-201ENST00000581095 76 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 Z83818.1-201ENST00000603584 150 ntBASIC0.52□□□□□ -2.33
SSX3Q99909 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.52□□□□□ -2.33
SSX3Q99909 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
SSX3Q99909 RNU6-738P-201ENST00000384531 106 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms