Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNORA40.5-201ENST00000391061 128 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-1190P-201ENST00000410811 104 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-1054P-201ENST00000411293 104 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 AC090844.1-201ENST00000422019 156 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-958P-201ENST00000516995 106 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 MIR5197-201ENST00000583721 112 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-40-201ENST00000606510 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 snoU13.31-201ENST00000607291 104 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 AC027335.2-201ENST00000624030 375 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 AC091895.1-201ENST00000624494 256 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
USP28Q96RU2 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
USP28Q96RU2 MIR342-201ENST00000362212 99 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.8-201ENST00000362353 102 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.270-201ENST00000364693 104 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 SNORA1.2-201ENST00000365189 134 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.357-201ENST00000365487 109 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.410-201ENST00000383992 113 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 SNORA24-201ENST00000384096 131 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.537-201ENST00000384626 109 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 Y_RNA.542-201ENST00000384641 111 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 RNU6-910P-201ENST00000390844 107 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 SNORA75.2-201ENST00000391138 150 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 SNORA75.3-201ENST00000391231 150 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 RNU6-588P-201ENST00000410281 105 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 HMGN1P33-201ENST00000432945 451 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 RNU7-67P-201ENST00000459003 62 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 RPS23P4-201ENST00000487908 423 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 SCARNA15-202ENST00000516881 127 ntBASIC1.02□□□□□ -2.25
USP28Q96RU2 AL391516.1-201ENST00000554380 2449 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RNA5SP264-201ENST00000363115 107 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RNU6-597P-201ENST00000365620 102 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RNU6-394P-201ENST00000410735 107 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RNA5SP127-201ENST00000411051 133 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 AL603825.1-201ENST00000438481 80 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RNU7-45P-201ENST00000459460 63 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 RPS29P24-201ENST00000486345 171 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.01□□□□□ -2.25
USP28Q96RU2 RNU7-121P-201ENST00000516604 62 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 MTND5P41-201ENST00000517498 206 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 PRELID3BP2-201ENST00000605362 201 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 AC098479.1-201ENST00000609225 154 ntBASIC1.01□□□□□ -2.25
USP28Q96RU2 MIR103A2-201ENST00000362154 78 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNU6-508P-201ENST00000363231 103 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNA5SP48-201ENST00000363969 126 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNU6-654P-201ENST00000364373 107 ntBASIC1□□□□□ -2.25
USP28Q96RU2 SNORA25.7-201ENST00000364375 127 ntBASIC1□□□□□ -2.25
USP28Q96RU2 Y_RNA.337-201ENST00000365312 102 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNU6-1292P-201ENST00000383856 107 ntBASIC1□□□□□ -2.25
USP28Q96RU2 Y_RNA.398-201ENST00000383952 99 ntBASIC1□□□□□ -2.25
USP28Q96RU2 SNORD116-18-201ENST00000383961 92 ntBASIC1□□□□□ -2.25
USP28Q96RU2 MIR624-201ENST00000385217 97 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNA5SP95-201ENST00000410319 137 ntBASIC1□□□□□ -2.25
USP28Q96RU2 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1□□□□□ -2.25
USP28Q96RU2 AL392103.1-201ENST00000447000 198 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNU2-11P-201ENST00000459191 187 ntBASIC1□□□□□ -2.25
USP28Q96RU2 AC005840.1-201ENST00000498412 377 ntBASIC1□□□□□ -2.25
USP28Q96RU2 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1□□□□□ -2.25
USP28Q96RU2 RNU6-998P-201ENST00000515894 101 ntBASIC1□□□□□ -2.25
USP28Q96RU2 RNU6-1149P-201ENST00000516810 97 ntBASIC1□□□□□ -2.25
USP28Q96RU2 SNORA70.22-201ENST00000517160 124 ntBASIC1□□□□□ -2.25
USP28Q96RU2 FAM71BP1-201ENST00000604431 523 ntBASIC1□□□□□ -2.25
USP28Q96RU2 AC021753.1-201ENST00000635724 168 ntBASIC1□□□□□ -2.25
USP28Q96RU2 Y_RNA.52-201ENST00000362760 96 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 RNU6-392P-201ENST00000364926 101 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 Y_RNA.351-201ENST00000365436 96 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 Y_RNA.555-201ENST00000384673 110 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 MIR532-201ENST00000385025 91 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 MIR3144-201ENST00000579460 79 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 DNAJC19P2-201ENST00000593340 302 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 AC091932.4-201ENST00000623386 200 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 MIR6844-201ENST00000637122 62 ntBASIC0.99□□□□□ -2.25
USP28Q96RU2 RNU6-151P-201ENST00000364158 107 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 RNU6-1187P-201ENST00000364771 110 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 RNU4-11P-201ENST00000365287 132 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 Y_RNA.497-201ENST00000384447 98 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 RNU6-125P-201ENST00000384505 107 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 RNU2-60P-201ENST00000517290 128 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 MIR4698-201ENST00000577795 80 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 MIR4661-201ENST00000582720 75 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 MIR6516-201ENST00000630554 81 ntBASIC0.98□□□□□ -2.25
USP28Q96RU2 Y_RNA.330-201ENST00000365230 109 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 SNORA75.5-201ENST00000391291 81 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 MIR548I3-201ENST00000408378 149 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 MIR548I1-201ENST00000408810 149 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 AL035398.1-201ENST00000430869 322 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 RNU7-96P-201ENST00000459535 64 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 RNU6-1053P-201ENST00000515930 101 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 RNU6-255P-201ENST00000516957 105 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 AL359821.1-201ENST00000605519 182 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 AL596211.1-201ENST00000569873 2277 ntBASIC0.97□□□□□ -2.25
USP28Q96RU2 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
USP28Q96RU2 Y_RNA.180-201ENST00000363867 113 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms