Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORA67.3-201ENST00000384366 140 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 MIR194-1-201ENST00000384892 85 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 RNA5SP144-201ENST00000410846 116 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 AC141557.1-201ENST00000540982 400 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 AC027279.3-201ENST00000625055 122 ntBASIC2.05□□□□□ -2.08
CLIP3Q96DZ5 RNU6-1123P-201ENST00000362347 106 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 Y_RNA.454-201ENST00000384224 113 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 SNORA27-201ENST00000384323 126 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 RNA5SP489-201ENST00000410986 109 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 AL161935.2-201ENST00000414627 60 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 AL512326.2-201ENST00000426359 151 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 PGBD4P5-201ENST00000445958 426 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 RNU6-998P-201ENST00000515894 101 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 SNORA77B-201ENST00000578179 125 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 AC095038.3-201ENST00000634439 195 ntBASIC2.04□□□□□ -2.08
CLIP3Q96DZ5 MIR424-201ENST00000362227 98 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 Y_RNA.342-201ENST00000365352 113 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 RNA5SP37-201ENST00000365420 130 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 RNU6-163P-201ENST00000384396 106 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 AC104435.1-201ENST00000483483 166 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 RNU7-6P-201ENST00000516845 62 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 MIR3618-201ENST00000580330 88 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 MALAT1.1-201ENST00000618249 95 ntBASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.03□□□□□ -2.08
CLIP3Q96DZ5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC092881.1-201ENST00000638218 2733 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 MIR342-201ENST00000362212 99 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.93-201ENST00000363066 109 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RNU6-424P-201ENST00000384367 105 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 SNORD38C-201ENST00000384381 69 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RNU6-816P-201ENST00000390914 107 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 SNORA48.3-201ENST00000391081 134 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RNU6-1268P-201ENST00000391214 107 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 U8.16-201ENST00000391279 133 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RNU6-1239P-201ENST00000391310 107 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AL023284.1-201ENST00000403956 276 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC004965.1-201ENST00000413033 213 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 POLR2J4-204ENST00000418424 324 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 SNX2P2-201ENST00000424553 323 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC015922.2-201ENST00000435593 184 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 snoU13.9-201ENST00000458927 103 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RPS23P4-201ENST00000487908 423 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC113410.1-201ENST00000505029 247 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC008834.1-201ENST00000511612 175 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 RNA5SP168-201ENST00000516642 112 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 AC004812.1-201ENST00000540773 146 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 MIR4778-201ENST00000577635 80 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.773-201ENST00000607168 90 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 ICE2P2-201ENST00000483823 2787 ntBASIC2.02□□□□□ -2.09
CLIP3Q96DZ5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-34-201ENST00000362441 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-12-201ENST00000362583 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-29-201ENST00000362834 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-9-201ENST00000362912 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-21-201ENST00000362963 81 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-14-201ENST00000363090 81 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-19-201ENST00000363098 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-18-201ENST00000363293 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-13-201ENST00000363358 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU6-1099P-201ENST00000363533 107 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-41-201ENST00000363608 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-11-201ENST00000363616 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-5-201ENST00000363633 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-39-201ENST00000363694 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-4-201ENST00000363810 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-16-201ENST00000363887 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-6-201ENST00000363942 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.220-201ENST00000364244 109 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-42-201ENST00000364273 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.241-201ENST00000364470 117 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-17-201ENST00000364612 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-15-201ENST00000364809 81 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-1-201ENST00000364961 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-26-201ENST00000365067 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-10-201ENST00000365073 81 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-43-201ENST00000365503 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-36-201ENST00000365629 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 MIR1289-2-201ENST00000408360 111 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 MIR1912-201ENST00000410389 80 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RPS3AP1-201ENST00000413190 320 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 AL353813.1-201ENST00000440700 253 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RPL39P25-201ENST00000449384 154 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU7-96P-201ENST00000459535 64 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU6ATAC17P-201ENST00000516074 71 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU7-181P-201ENST00000517234 74 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 AC090821.2-201ENST00000523552 176 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 SNORD115-40-201ENST00000606510 82 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 AC021613.1-201ENST00000623880 111 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 MIR2052-201ENST00000636055 55 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 MIR1255B1-201ENST00000636325 63 ntBASIC2.01□□□□□ -2.09
CLIP3Q96DZ5 RNU6-833P-201ENST00000363486 107 ntBASIC2□□□□□ -2.09
CLIP3Q96DZ5 Y_RNA.531-201ENST00000384589 121 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 173.2 ms