Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 RN7SKP179-201ENST00000516126 217 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 RNU11-2P-201ENST00000516898 142 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 AP003716.2-201ENST00000528260 108 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 MIR548AO-201ENST00000579992 96 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 AC098479.1-201ENST00000609225 154 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 MIR8070-201ENST00000616510 88 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 MIR6844-201ENST00000637122 62 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.441-201ENST00000384123 112 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 SNORD12-201ENST00000391002 90 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 SNORD37.2-201ENST00000391075 66 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 MIR1185-1-201ENST00000408598 86 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU2-64P-201ENST00000411315 191 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU7-73P-201ENST00000458743 63 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU2-11P-201ENST00000459191 187 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 SNORD79.1-201ENST00000516069 84 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU7-40P-201ENST00000516397 64 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 FTX_2.1-201ENST00000618816 94 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 MIR376A2-201ENST00000636782 80 ntBASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CHMP4CQ96CF2 RNU6-396P-201ENST00000365369 105 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.363-201ENST00000365529 113 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 RNU6-939P-201ENST00000384634 107 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 SNORA75.2-201ENST00000391138 150 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 SNORA40.6-201ENST00000391153 128 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 SNORA75.3-201ENST00000391231 150 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 SNORA75.5-201ENST00000391291 81 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 RNU6-1135P-201ENST00000411083 103 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 AC074198.2-201ENST00000508153 258 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 MIR2115-201ENST00000516657 100 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 AC068338.1-201ENST00000565567 176 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 MIR3646-201ENST00000578301 84 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 MIR3660-201ENST00000584845 100 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 DNAJC19P2-201ENST00000593340 302 ntBASIC1.48□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.272-201ENST00000364696 102 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 RNU6-818P-201ENST00000364837 108 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 RNU6-1336P-201ENST00000383886 109 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 MIR548I3-201ENST00000408378 149 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 MRPL35P3-201ENST00000421557 364 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 SEPT14P17-201ENST00000617978 177 ntBASIC1.47□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.150-201ENST00000363562 102 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 MIR1287-201ENST00000408492 90 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 AC063976.4-201ENST00000421971 163 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 RNU7-90P-201ENST00000459216 62 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 RNU6-1149P-201ENST00000516810 97 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 MIR6078-201ENST00000611069 100 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 AL596211.1-201ENST00000569873 2277 ntBASIC1.46□□□□□ -2.18
CHMP4CQ96CF2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU6-392P-201ENST00000364926 101 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 MIR499A-201ENST00000384903 122 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU6-913P-201ENST00000390913 95 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 AL392103.1-201ENST00000447000 198 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU7-21P-201ENST00000459430 62 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU7-121P-201ENST00000516604 62 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 AC027335.2-201ENST00000624030 375 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 AC008163.1-202ENST00000636004 2889 ntBASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
CHMP4CQ96CF2 RNU6-1082P-201ENST00000364574 107 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 SNORA1.1-201ENST00000364671 133 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 RNU1-133P-201ENST00000364867 167 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 RNU6-886P-201ENST00000384319 105 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 MIR1302-7-201ENST00000408841 72 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 AC104465.1-201ENST00000611365 139 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 AC091932.4-201ENST00000623386 200 ntBASIC1.44□□□□□ -2.18
CHMP4CQ96CF2 RNA5SP261-201ENST00000410536 106 ntBASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 AP000753.3-201ENST00000604083 169 ntBASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 MIR6516-201ENST00000630554 81 ntBASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 MIR3658-201ENST00000636291 56 ntBASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 MTND5P32-201ENST00000560711 1802 ntBASIC1.43□□□□□ -2.18
CHMP4CQ96CF2 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CHMP4CQ96CF2 SNORA25.9-201ENST00000365087 128 ntBASIC1.42□□□□□ -2.18
CHMP4CQ96CF2 RNU6-449P-201ENST00000383914 107 ntBASIC1.42□□□□□ -2.18
CHMP4CQ96CF2 AC131055.1-201ENST00000584626 316 ntBASIC1.42□□□□□ -2.18
CHMP4CQ96CF2 AL020996.3-201ENST00000606617 222 ntBASIC1.42□□□□□ -2.18
CHMP4CQ96CF2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 MIR96-201ENST00000362288 78 ntBASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 Y_RNA.52-201ENST00000362760 96 ntBASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 Y_RNA.555-201ENST00000384673 110 ntBASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 MIR618-201ENST00000385287 98 ntBASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 RNU6-588P-201ENST00000410281 105 ntBASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.41□□□□□ -2.18
CHMP4CQ96CF2 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.18
CHMP4CQ96CF2 SNORD116-18-201ENST00000383961 92 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 SNORA20-201ENST00000384662 132 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 SNORD38B-201ENST00000384690 67 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 RNU6-613P-201ENST00000410412 108 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 HMGN1P33-201ENST00000432945 451 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 AC002429.1-201ENST00000437672 148 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 RNA5SP102-201ENST00000516865 106 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 SCARNA15-202ENST00000516881 127 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 SNORD38B-202ENST00000625943 69 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 Z97988.1-201ENST00000637697 135 ntBASIC1.4□□□□□ -2.19
CHMP4CQ96CF2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms