Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MTND4LP30-201ENST00000454092 297 ntBASIC0.32□□□□□ -2.36
CCDC54Q8NEL0 AL356055.1-201ENST00000602528 446 ntBASIC0.32□□□□□ -2.36
CCDC54Q8NEL0 AL162730.1-201ENST00000605734 292 ntBASIC0.32□□□□□ -2.36
CCDC54Q8NEL0 AL442067.1-201ENST00000613261 223 ntBASIC0.32□□□□□ -2.36
CCDC54Q8NEL0 MIR103A1-201ENST00000362165 78 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.82-201ENST00000363000 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.92-201ENST00000363043 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 RNU6-653P-201ENST00000363074 106 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.235-201ENST00000364412 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 SNORA1.1-201ENST00000364671 133 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 RNA5SP517-201ENST00000364724 117 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.306-201ENST00000365015 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.312-201ENST00000365089 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.322-201ENST00000365151 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 MIR938-201ENST00000401216 83 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 MIR548J-201ENST00000408833 112 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.604-201ENST00000410574 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 MIR18B-201ENST00000454574 71 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.650-201ENST00000459002 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 AC002350.1-201ENST00000490759 375 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 RNU6-504P-201ENST00000516568 104 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.777-201ENST00000516982 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 RNU6-1223P-201ENST00000517124 104 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 AL442663.2-201ENST00000554385 511 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 MIR4282-201ENST00000583613 67 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 SNORD92-201ENST00000585078 85 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.771-201ENST00000598668 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.789-201ENST00000622480 102 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 MIR6717-201ENST00000622747 73 ntBASIC0.31□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.7-201ENST00000362352 102 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.44-201ENST00000362676 108 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 RNU6-472P-201ENST00000384299 107 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.483-201ENST00000384380 101 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 RNU6-381P-201ENST00000391259 108 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 AL606845.1-201ENST00000404881 255 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 RNU7-96P-201ENST00000459535 64 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 MTATP8P1-201ENST00000467115 207 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 RNU7-53P-201ENST00000516705 60 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 AL078603.1-201ENST00000603824 313 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 AC037487.3-201ENST00000606668 112 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 MIR8066-201ENST00000617280 78 ntBASIC0.3□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.122-201ENST00000363331 96 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.224-201ENST00000364308 111 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 RNU2-55P-201ENST00000411146 174 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 TRBVB-201ENST00000477100 408 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 RNU6-1143P-201ENST00000516125 104 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 RNU6-1299P-201ENST00000516316 100 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 RNA5SP153-201ENST00000516498 76 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 RNA5SP94-201ENST00000516917 108 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 U2.14-201ENST00000615943 113 ntBASIC0.29□□□□□ -2.36
CCDC54Q8NEL0 MIR342-201ENST00000362212 99 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 SNORD44.1-201ENST00000363202 61 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 SNORA36.1-201ENST00000363424 132 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 RNU6-1189P-201ENST00000383958 107 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.518-201ENST00000384552 113 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 MIR616-201ENST00000385293 97 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.617-201ENST00000410920 90 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 RNA5SP220-201ENST00000516298 104 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 RNU7-156P-201ENST00000517214 74 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 MIR3129-201ENST00000581095 76 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 AL365265.1-201ENST00000621045 234 ntBASIC0.28□□□□□ -2.36
CCDC54Q8NEL0 Y_RNA.42-201ENST00000362660 108 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.76-201ENST00000362931 109 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNU6-797P-201ENST00000363101 109 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.202-201ENST00000364083 110 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 SNORA63C-201ENST00000364578 129 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.410-201ENST00000383992 113 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.416-201ENST00000384014 113 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.432-201ENST00000384087 111 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNU6-679P-201ENST00000391003 106 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNU2-70P-201ENST00000410718 179 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNU6-863P-201ENST00000515989 104 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 Y_RNA.676-201ENST00000516393 96 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 MIR5197-201ENST00000583721 112 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 AC078938.1-201ENST00000620993 318 ntBASIC0.27□□□□□ -2.37
CCDC54Q8NEL0 RNY3P5-201ENST00000384127 102 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 RNU6-342P-201ENST00000384521 104 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 MIR1257-201ENST00000408490 117 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 AC098934.3-201ENST00000430450 190 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 SNORA25.18-201ENST00000607153 114 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 AC243829.6-201ENST00000612652 106 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 MIR6513-201ENST00000621188 64 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 AC091932.4-201ENST00000623386 200 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 MIR6841-201ENST00000637129 72 ntBASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
CCDC54Q8NEL0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 RNU1-133P-201ENST00000364867 167 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 RNU6-1227P-201ENST00000383981 107 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 MIR518A1-201ENST00000385068 85 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 U8.15-201ENST00000390947 134 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 MIR548F4-201ENST00000408515 105 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 MIR3678-201ENST00000578455 94 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 AC092634.7-201ENST00000621022 103 ntBASIC0.25□□□□□ -2.37
CCDC54Q8NEL0 AC243829.3-201ENST00000622177 108 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms