Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR1912-201ENST00000410389 80 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.639-201ENST00000458981 102 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 RNU2-11P-201ENST00000459191 187 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 AC133485.4-201ENST00000561835 220 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 AC124312.5-201ENST00000604451 268 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 AC007485.1-201ENST00000616755 206 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 AC090574.1-201ENST00000623186 233 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 MIR4315-1-201ENST00000636800 73 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 MIR4315-2-201ENST00000640925 73 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 SNORA25.1-201ENST00000362326 128 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.58-201ENST00000362807 102 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.154-201ENST00000363624 102 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.183-201ENST00000363882 113 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.197-201ENST00000364004 102 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 RNY3P1-201ENST00000365085 102 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.315-201ENST00000365117 102 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 SNORD12C-201ENST00000386307 89 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 RNU2-31P-201ENST00000516954 155 ntBASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.08□□□□□ -2.4
HDDC3Q8N4P3 SNORD61-201ENST00000384252 73 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 MIR563-201ENST00000385080 79 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 SNORA53-201ENST00000391141 249 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 SNORD93-201ENST00000408813 74 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 AC069113.3-201ENST00000521019 150 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 AC006006.1-201ENST00000603082 144 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 AC078938.1-201ENST00000620993 318 ntBASIC0.07□□□□□ -2.4
HDDC3Q8N4P3 MIR342-201ENST00000362212 99 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 MIR30D-201ENST00000362283 70 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-923P-201ENST00000364753 107 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-815P-201ENST00000384080 113 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 MIR548A2-201ENST00000384956 97 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.579-201ENST00000390939 94 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-1190P-201ENST00000410811 104 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 MTCO2P24-201ENST00000515611 426 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-875P-201ENST00000516488 106 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-504P-201ENST00000516568 104 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.715-201ENST00000517082 110 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 AC112693.2-201ENST00000556538 232 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.802-201ENST00000614892 130 ntBASIC0.06□□□□□ -2.4
HDDC3Q8N4P3 RNU6-888P-201ENST00000363010 101 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.185-201ENST00000363894 100 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.263-201ENST00000364659 114 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 RNU6-290P-201ENST00000365212 101 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 SNORD115-46-201ENST00000390982 71 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 SNORA26-201ENST00000391286 122 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 RNU4-83P-201ENST00000410863 133 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 PMCHL1-202ENST00000423102 261 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.631-201ENST00000459607 101 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 RNU6-998P-201ENST00000515894 101 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 MIR4802-201ENST00000581881 80 ntBASIC0.05□□□□□ -2.4
HDDC3Q8N4P3 MIR302B-201ENST00000362188 73 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.60-201ENST00000362831 98 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 MIR526A2-201ENST00000390198 65 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 MIR1295A-201ENST00000408463 79 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 RNA5SP237-201ENST00000410414 113 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 RNU6-507P-201ENST00000516045 100 ntBASIC0.04□□□□□ -2.4
HDDC3Q8N4P3 RNU6-1189P-201ENST00000383958 107 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.581-201ENST00000391017 97 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 RNA5SP261-201ENST00000410536 106 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 AL512326.2-201ENST00000426359 151 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 RNU6-897P-201ENST00000517135 105 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 AP003733.2-201ENST00000529409 171 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 RAC1P9-201ENST00000604990 392 ntBASIC0.03□□□□□ -2.4
HDDC3Q8N4P3 RNU6-1283P-201ENST00000365314 105 ntBASIC0.02□□□□□ -2.41
HDDC3Q8N4P3 SNORA2A-201ENST00000383885 135 ntBASIC0.02□□□□□ -2.41
HDDC3Q8N4P3 RNU6-662P-201ENST00000384253 104 ntBASIC0.02□□□□□ -2.41
HDDC3Q8N4P3 RNU2-59P-201ENST00000410482 191 ntBASIC0.02□□□□□ -2.41
HDDC3Q8N4P3 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.02□□□□□ -2.41
HDDC3Q8N4P3 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.394-201ENST00000383942 103 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.410-201ENST00000383992 113 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.518-201ENST00000384552 113 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.549-201ENST00000384657 102 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 RNU6-101P-201ENST00000410323 104 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 AF228730.3-201ENST00000436691 102 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 SNORA40.15-201ENST00000516884 107 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 MIR5688-201ENST00000580619 83 ntBASIC0.01□□□□□ -2.41
HDDC3Q8N4P3 RNU4-10P-201ENST00000364383 140 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 RNU6-450P-201ENST00000364654 107 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 MIR644A-201ENST00000385262 94 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 SEPT7P4-201ENST00000437076 306 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 MTND4P19-201ENST00000446659 478 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 RNU6-1299P-201ENST00000516316 100 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 RNA5SP268-201ENST00000516828 124 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 AC131281.1-201ENST00000522984 164 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 uc_338.22-201ENST00000622722 187 ntBASIC0□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 RNU6-403P-201ENST00000363163 104 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 SNORA36.1-201ENST00000363424 132 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 RNU6-326P-201ENST00000365480 107 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 SNORA8.3-201ENST00000384679 139 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 AL731563.1-201ENST00000442202 214 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 AC090971.5-201ENST00000621102 293 ntBASIC-0.01□□□□□ -2.41
HDDC3Q8N4P3 MIR6717-201ENST00000622747 73 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 278.3 ms