Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MIR1302-6-201ENST00000408466 90 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 RNU6-1190P-201ENST00000410811 104 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 RNU2-11P-201ENST00000459191 187 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 RNU6-453P-201ENST00000516819 85 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 U6.104-201ENST00000637979 90 ntBASIC0.47□□□□□ -2.33
SKA3Q8IX90 Y_RNA.304-201ENST00000365011 112 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 RNU6-1189P-201ENST00000383958 107 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 RNU6-1228P-201ENST00000391014 107 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 RNU6-381P-201ENST00000391259 108 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 RNA5SP220-201ENST00000516298 104 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 RNA5SP153-201ENST00000516498 76 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 AL442663.2-201ENST00000554385 511 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 MIR4804-201ENST00000581683 73 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 MIR4676-201ENST00000583078 72 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 AC020891.4-201ENST00000605745 93 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 MIR8055-201ENST00000610739 97 ntBASIC0.46□□□□□ -2.34
SKA3Q8IX90 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
SKA3Q8IX90 MIR342-201ENST00000362212 99 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 Y_RNA.326-201ENST00000365176 113 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 Y_RNA.410-201ENST00000383992 113 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 Y_RNA.440-201ENST00000384120 114 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 RNU6-472P-201ENST00000384299 107 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 RNU6-1160P-201ENST00000384546 104 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 Y_RNA.574-201ENST00000384766 95 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 MIR548F4-201ENST00000408515 105 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 RNU6-602P-201ENST00000411155 105 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 SNRPGP8-201ENST00000454064 226 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 RNA5SP121-201ENST00000516537 101 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 MIR4282-201ENST00000583613 67 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 SNORA4-201ENST00000584302 138 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 AL365265.1-201ENST00000621045 234 ntBASIC0.45□□□□□ -2.34
SKA3Q8IX90 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
SKA3Q8IX90 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
SKA3Q8IX90 Y_RNA.23-201ENST00000362496 106 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 Y_RNA.116-201ENST00000363292 103 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 RNU6-1309P-201ENST00000363305 108 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 Y_RNA.122-201ENST00000363331 96 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 SNORA1-201ENST00000384107 130 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 Y_RNA.518-201ENST00000384552 113 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 MIR588-201ENST00000384900 83 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 SNORD77.3-201ENST00000391113 65 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 RNU6-1165P-201ENST00000410119 107 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 RNU6-177P-201ENST00000411257 104 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 AC092628.1-201ENST00000436250 252 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 AL157398.1-201ENST00000452981 186 ntBASIC0.44□□□□□ -2.34
SKA3Q8IX90 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.44□□□□□ -2.34
SKA3Q8IX90 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.44□□□□□ -2.34
SKA3Q8IX90 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 RNU6-653P-201ENST00000363074 106 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 SNORA63-201ENST00000363450 132 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 Y_RNA.396-201ENST00000383949 103 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 RNU6-1237P-201ENST00000384777 107 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 MIR140-201ENST00000385282 100 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 MIR1257-201ENST00000408490 117 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 AC098934.3-201ENST00000430450 190 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
SKA3Q8IX90 MIR3129-201ENST00000581095 76 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 MIR6734-201ENST00000621166 68 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 MIR376A2-201ENST00000636782 80 ntBASIC0.43□□□□□ -2.34
SKA3Q8IX90 Y_RNA.54-201ENST00000362766 105 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 Y_RNA.262-201ENST00000364641 102 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 Y_RNA.352-201ENST00000365439 102 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 Y_RNA.416-201ENST00000384014 113 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 MIR606-201ENST00000384851 96 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 SNORA79-201ENST00000408376 140 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 MIR18B-201ENST00000454574 71 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 snoU13.2-201ENST00000459201 104 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.42□□□□□ -2.34
SKA3Q8IX90 RNU6-229P-201ENST00000516614 102 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 AC018659.1-201ENST00000551083 169 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.42□□□□□ -2.34
SKA3Q8IX90 MIR3612-201ENST00000579753 87 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 MIR5197-201ENST00000583721 112 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 AL442067.1-201ENST00000613261 223 ntBASIC0.42□□□□□ -2.34
SKA3Q8IX90 MIR302B-201ENST00000362188 73 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 Y_RNA.176-201ENST00000363815 109 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNU1-133P-201ENST00000364867 167 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNU6-728P-201ENST00000365375 104 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNU6-42P-201ENST00000384165 107 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
SKA3Q8IX90 MIR938-201ENST00000401216 83 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNU7-45P-201ENST00000459460 63 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNA5SP436-201ENST00000516020 115 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 RNU6-561P-201ENST00000516222 102 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.41□□□□□ -2.34
SKA3Q8IX90 Z83818.1-201ENST00000603584 150 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
SKA3Q8IX90 MIR18A-201ENST00000362310 71 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 Y_RNA.542-201ENST00000384641 111 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 MIR563-201ENST00000385080 79 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 MIR518E-201ENST00000385252 88 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 SNORD12C-201ENST00000386307 89 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 RNU2-38P-201ENST00000410856 79 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 RNU7-56P-201ENST00000458744 62 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 RNU7-185P-201ENST00000459215 60 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 AL117187.1-201ENST00000555482 181 ntBASIC0.4□□□□□ -2.35
SKA3Q8IX90 MIR4643-201ENST00000577473 78 ntBASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms