Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RNU1-29P-201ENST00000606574 126 ntBASIC-0.27□□□□□ -2.45
ZNF404Q494X3 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.27□□□□□ -2.45
ZNF404Q494X3 MIR499B-201ENST00000636498 73 ntBASIC-0.27□□□□□ -2.45
ZNF404Q494X3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
ZNF404Q494X3 MIR302B-201ENST00000362188 73 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 RNU6-161P-201ENST00000363051 106 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 RNU6-653P-201ENST00000363074 106 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 Y_RNA.222-201ENST00000364264 102 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 SNORA72.6-201ENST00000384520 129 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 Y_RNA.526-201ENST00000384572 110 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 MIR215-201ENST00000384858 110 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 U8.15-201ENST00000390947 134 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 RNU6-876P-201ENST00000391295 104 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 RNA5SP261-201ENST00000410536 106 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 RNU7-165P-201ENST00000458864 60 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 Y_RNA.655-201ENST00000515919 96 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 MIR3152-201ENST00000579801 74 ntBASIC-0.28□□□□□ -2.45
ZNF404Q494X3 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 RNU6-514P-201ENST00000384208 107 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 Y_RNA.496-201ENST00000384444 101 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 SNORD116-29-201ENST00000384516 83 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 RNU6-291P-201ENST00000384720 107 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 AC096949.1-201ENST00000412047 152 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 AF228730.3-201ENST00000436691 102 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 RNU7-159P-201ENST00000459284 62 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 TRBVB-201ENST00000477100 408 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 MRPS35P2-201ENST00000508242 191 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 MIR4491-201ENST00000581087 68 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 C8orf59P2-201ENST00000603441 271 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 AC244669.1-204ENST00000621564 178 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 AL606534.2-204ENST00000635008 178 ntBASIC-0.29□□□□□ -2.46
ZNF404Q494X3 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 Y_RNA.387-201ENST00000383918 102 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 RNU6-535P-201ENST00000384722 107 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 MT-TL1-201ENST00000386347 75 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.3□□□□□ -2.46
ZNF404Q494X3 FGF7P6-202ENST00000451282 293 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 RNU7-45P-201ENST00000459460 63 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 MTCO2P24-201ENST00000515611 426 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 Y_RNA.661-201ENST00000516003 99 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 SNORA20.3-201ENST00000516880 132 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 AC138869.1-201ENST00000568623 124 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 MIR5692C2-201ENST00000577959 77 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 MIR4752-201ENST00000579672 72 ntBASIC-0.3□□□□□ -2.46
ZNF404Q494X3 RNU6-652P-201ENST00000365488 107 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 RNU6-597P-201ENST00000365620 102 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 RNU6-397P-201ENST00000516226 104 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 Y_RNA.718-201ENST00000517110 102 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 AP003733.2-201ENST00000529409 171 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 AL133255.1-201ENST00000606374 441 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 AC092794.1-201ENST00000612734 582 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 AC104985.2-201ENST00000620598 500 ntBASIC-0.31□□□□□ -2.46
ZNF404Q494X3 SNORD113-8-201ENST00000363497 74 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 RNU1-115P-201ENST00000365329 160 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 RNU6-130P-201ENST00000411112 103 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.32□□□□□ -2.46
ZNF404Q494X3 RNA5SP285-201ENST00000516619 119 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 AC141846.1-201ENST00000568348 142 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 MTND5P34-201ENST00000568888 325 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 SNORD58B-201ENST00000607313 66 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 PART1_1.1-201ENST00000611761 217 ntBASIC-0.32□□□□□ -2.46
ZNF404Q494X3 SNORA18.1-201ENST00000363418 128 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 MIR214-201ENST00000385214 110 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 SNORD4A-201ENST00000459174 72 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 AC084781.2-201ENST00000615568 161 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 AL596211.1-201ENST00000569873 2277 ntBASIC-0.33□□□□□ -2.46
ZNF404Q494X3 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.384-201ENST00000383909 102 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.569-201ENST00000384749 103 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 MIR501-201ENST00000390204 84 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.602-201ENST00000410535 92 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 AC040926.1-201ENST00000530195 238 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 AP003072.1-201ENST00000531740 145 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 MIR548AD-201ENST00000584780 82 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 MIR6759-201ENST00000638110 65 ntBASIC-0.34□□□□□ -2.46
ZNF404Q494X3 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 Y_RNA.187-201ENST00000363918 113 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 Y_RNA.252-201ENST00000364556 101 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 RNU6-949P-201ENST00000384040 107 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 RNU6-102P-201ENST00000384485 104 ntBASIC-0.35□□□□□ -2.47
ZNF404Q494X3 MIR526A2-201ENST00000390198 65 ntBASIC-0.35□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms