Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP000942.4-201ENST00000604811 241 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
COL28A1Q2UY09 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
COL28A1Q2UY09 MIR103A2-201ENST00000362154 78 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.241-201ENST00000364470 117 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.515-201ENST00000384535 112 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 MIR1185-1-201ENST00000408598 86 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 AL121914.1-201ENST00000450188 156 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 RNU7-21P-201ENST00000459430 62 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 RNA5SP395-201ENST00000516567 118 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 AC130289.1-201ENST00000577321 73 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 AL365205.2-201ENST00000594586 68 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 AC243994.1-201ENST00000618627 109 ntBASIC1.15□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.23-201ENST00000362496 106 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
COL28A1Q2UY09 MIR1302-7-201ENST00000408841 72 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.14□□□□□ -2.23
COL28A1Q2UY09 RPS29P29-201ENST00000456396 171 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 SNORA18.4-201ENST00000516440 124 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 RNA5SP404-201ENST00000517118 132 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 AC090821.2-201ENST00000523552 176 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 SEPT14P17-201ENST00000617978 177 ntBASIC1.14□□□□□ -2.23
COL28A1Q2UY09 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
COL28A1Q2UY09 RNU6-1020P-201ENST00000363684 107 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.182-201ENST00000363880 111 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 RNU6-1292P-201ENST00000383856 107 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 MIR570-201ENST00000384917 97 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 SNORA75.2-201ENST00000391138 150 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 SNORA75.3-201ENST00000391231 150 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 AC063976.4-201ENST00000421971 163 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 AF228730.3-201ENST00000436691 102 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 snoU13.16-201ENST00000459350 104 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 MRPS18CP4-201ENST00000535821 231 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 MTND1P7-201ENST00000632801 297 ntBASIC1.13□□□□□ -2.23
COL28A1Q2UY09 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
COL28A1Q2UY09 SNORA25.3-201ENST00000363205 127 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RNA5SP62-201ENST00000363457 110 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RNU6-1189P-201ENST00000383958 107 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RNU6-643P-201ENST00000384018 107 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 SNORA27-201ENST00000384323 126 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RNU7-73P-201ENST00000458743 63 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RNU7-90P-201ENST00000459216 62 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 HAR1A.1-201ENST00000459583 118 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 RPS29P24-201ENST00000486345 171 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 SNORD116-25-201ENST00000516517 92 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 SNORD36C-201ENST00000516733 66 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.700-201ENST00000516806 100 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 MIR378D2-201ENST00000580636 98 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 AC211469.2-201ENST00000605461 205 ntBASIC1.12□□□□□ -2.23
COL28A1Q2UY09 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.11□□□□□ -2.23
COL28A1Q2UY09 RNU6-978P-201ENST00000364371 103 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 SNORA1-201ENST00000384107 130 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.494-201ENST00000384432 111 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 RNU6-939P-201ENST00000384634 107 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 SNORD77.3-201ENST00000391113 65 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.11□□□□□ -2.23
COL28A1Q2UY09 AC002429.1-201ENST00000437672 148 ntBASIC1.11□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.274-201ENST00000364714 101 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.412-201ENST00000384001 104 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.440-201ENST00000384120 114 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.644-201ENST00000459006 113 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU7-96P-201ENST00000459535 64 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.674-201ENST00000516362 113 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU7-40P-201ENST00000516397 64 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU7-53P-201ENST00000516705 60 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU6-388P-201ENST00000517012 105 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU6-389P-201ENST00000517048 105 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 CYP3A137P-201ENST00000562436 69 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 MIR548AO-201ENST00000579992 96 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 MIR5197-201ENST00000583721 112 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 AC078938.1-201ENST00000620993 318 ntBASIC1.1□□□□□ -2.23
COL28A1Q2UY09 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
COL28A1Q2UY09 RNU6-312P-201ENST00000364629 107 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 RNU6-200P-201ENST00000364743 107 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 Y_RNA.297-201ENST00000364950 91 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 RNU6-47P-201ENST00000383866 107 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 MT-TN-201ENST00000387400 73 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 MIR1285-1-201ENST00000408593 84 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 RNU6-613P-201ENST00000410412 108 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 AL138752.1-201ENST00000452964 351 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 RNU7-67P-201ENST00000459003 62 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 MIR2115-201ENST00000516657 100 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 RNA5SP330-201ENST00000517096 96 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 MIR4431-201ENST00000579990 94 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 AC072026.1-201ENST00000605023 201 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 U6.106-201ENST00000636360 105 ntBASIC1.09□□□□□ -2.23
COL28A1Q2UY09 MIR373-201ENST00000362273 69 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.85-201ENST00000363014 111 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 RNA5SP257-201ENST00000363023 116 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 Y_RNA.233-201ENST00000364407 101 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 RNU6-396P-201ENST00000365369 105 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 MIR200A-201ENST00000384875 90 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
COL28A1Q2UY09 AL035398.1-201ENST00000430869 322 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 RNU6-998P-201ENST00000515894 101 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.08□□□□□ -2.24
COL28A1Q2UY09 AL109933.3-201ENST00000619095 188 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 AC008163.1-202ENST00000636004 2889 ntBASIC1.08□□□□□ -2.24
COL28A1Q2UY09 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 188.1 ms