Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORD115-14-201ENST00000363090 81 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-13-201ENST00000363358 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-41-201ENST00000363608 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-11-201ENST00000363616 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-5-201ENST00000363633 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-39-201ENST00000363694 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-4-201ENST00000363810 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-16-201ENST00000363887 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-6-201ENST00000363942 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-42-201ENST00000364273 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-15-201ENST00000364809 81 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-1-201ENST00000364961 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-26-201ENST00000365067 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-10-201ENST00000365073 81 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-43-201ENST00000365503 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-36-201ENST00000365629 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 AC004965.1-201ENST00000413033 213 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 RNU7-95P-201ENST00000459222 64 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 RNU6-998P-201ENST00000515894 101 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 RNU7-6P-201ENST00000516845 62 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.93□□□□□ -2.1
COL4A3Q01955 MIR3152-201ENST00000579801 74 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 SNORD115-40-201ENST00000606510 82 ntBASIC1.93□□□□□ -2.1
COL4A3Q01955 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL4A3Q01955 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL4A3Q01955 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL4A3Q01955 SNORA63D-201ENST00000364359 132 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 SNORA1.2-201ENST00000365189 134 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 SNORA51.10-201ENST00000384418 136 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 Y_RNA.544-201ENST00000384650 113 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 MIR548D2-201ENST00000384955 97 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 MIR136-201ENST00000385207 82 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 MIR1283-2-201ENST00000408621 87 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 RPL39P25-201ENST00000449384 154 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 RNU6-56P-201ENST00000516986 93 ntBASIC1.92□□□□□ -2.1
COL4A3Q01955 MIRLET7G-201ENST00000362280 84 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 RNA5SP138-201ENST00000365098 114 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 Y_RNA.531-201ENST00000384589 121 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 MIR597-201ENST00000384968 97 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 AL022718.1-201ENST00000412004 84 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 RNU7-96P-201ENST00000459535 64 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.91□□□□□ -2.1
COL4A3Q01955 RNU4-16P-201ENST00000364737 141 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-294P-201ENST00000364999 102 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-1031P-201ENST00000384773 107 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 MIR520A-201ENST00000384862 85 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-1319P-201ENST00000390855 104 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-747P-201ENST00000390928 104 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-241P-201ENST00000391148 104 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-177P-201ENST00000411257 104 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 AL512326.2-201ENST00000426359 151 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-893P-201ENST00000458841 100 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A3Q01955 RNA5SP182-201ENST00000516064 82 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-970P-201ENST00000516312 107 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 RNU6-958P-201ENST00000516995 106 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 AC022523.2-201ENST00000561045 150 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
COL4A3Q01955 AL162726.3-218ENST00000636401 95 ntBASIC1.9□□□□□ -2.1
COL4A3Q01955 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
COL4A3Q01955 Y_RNA.78-201ENST00000362970 110 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 SNORD56.5-201ENST00000364281 72 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 SNORA4.2-201ENST00000365313 147 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 RNA5SP465-201ENST00000391195 109 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 MIR1912-201ENST00000410389 80 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 HSPE1P9-201ENST00000440046 311 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 RNVU1-2-201ENST00000516326 135 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 SNORA25.15-201ENST00000516487 89 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 SUB1P4-201ENST00000566062 339 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.9□□□□□ -2.11
COL4A3Q01955 AC021613.1-201ENST00000623880 111 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 MIR2052-201ENST00000636055 55 ntBASIC1.9□□□□□ -2.11
COL4A3Q01955 VTRNA1-1-201ENST00000363120 99 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 Y_RNA.299-201ENST00000364973 94 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 RNA5SP37-201ENST00000365420 130 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 MIR518A2-201ENST00000384966 87 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 MIR590-201ENST00000385008 97 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 MIR516B2-201ENST00000385190 85 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 SNORA67.5-201ENST00000391036 107 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.89□□□□□ -2.11
COL4A3Q01955 RNU7-67P-201ENST00000459003 62 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 AC025033.1-201ENST00000463883 194 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 SNORA31.4-201ENST00000516049 129 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 RNA5SP102-201ENST00000516865 106 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 AL049779.4-201ENST00000604500 156 ntBASIC1.89□□□□□ -2.11
COL4A3Q01955 RNU6-640P-201ENST00000363693 105 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 Y_RNA.507-201ENST00000384500 99 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 RNU6-1067P-201ENST00000384752 107 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 RNA5SP144-201ENST00000410846 116 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 AC093850.1-201ENST00000454121 251 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 RNU6-250P-201ENST00000516958 103 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 MIR548AR-201ENST00000582191 57 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 Y_RNA.818-201ENST00000618813 71 ntBASIC1.88□□□□□ -2.11
COL4A3Q01955 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL4A3Q01955 RNU1-109P-201ENST00000383960 147 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 MIR598-201ENST00000384868 97 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 MIR452-201ENST00000385020 85 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 HMGN2P39-201ENST00000398005 273 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 MIR1323-201ENST00000408090 73 ntBASIC1.87□□□□□ -2.11
COL4A3Q01955 RNU1-123P-201ENST00000458950 160 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms