Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PMCHL1-202ENST00000423102 261 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.04□□□□□ -2.4
FOXA1P55317 RNU6-365P-201ENST00000517113 106 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 AC124312.5-201ENST00000604451 268 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 RAC1P9-201ENST00000604990 392 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.04□□□□□ -2.4
FOXA1P55317 Y_RNA.183-201ENST00000363882 113 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU4-10P-201ENST00000364383 140 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 Y_RNA.356-201ENST00000365475 113 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 AF228730.3-201ENST00000436691 102 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU7-96P-201ENST00000459535 64 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 Y_RNA.631-201ENST00000459607 101 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU6-998P-201ENST00000515894 101 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU6-469P-201ENST00000516253 101 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU6-897P-201ENST00000517135 105 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 AC131281.1-201ENST00000522984 164 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.03□□□□□ -2.4
FOXA1P55317 AC112693.2-201ENST00000556538 232 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 AC090574.1-201ENST00000623186 233 ntBASIC0.03□□□□□ -2.4
FOXA1P55317 RNU6-740P-201ENST00000364734 105 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.303-201ENST00000364998 94 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 RNU6-662P-201ENST00000384253 104 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.581-201ENST00000391017 97 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 SNORD93-201ENST00000408813 74 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 RNU4-83P-201ENST00000410863 133 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.617-201ENST00000410920 90 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 RNU6-504P-201ENST00000516568 104 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.02□□□□□ -2.41
FOXA1P55317 MIR4768-201ENST00000585270 74 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 MIR8066-201ENST00000617280 78 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 uc_338.22-201ENST00000622722 187 ntBASIC0.02□□□□□ -2.41
FOXA1P55317 MIR342-201ENST00000362212 99 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.42-201ENST00000362660 108 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.66-201ENST00000362862 102 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.105-201ENST00000363182 111 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.263-201ENST00000364659 114 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNU6-290P-201ENST00000365212 101 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 SNORA63.7-201ENST00000365579 123 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.394-201ENST00000383942 103 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 MIR329-2-201ENST00000385029 84 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 MIR644A-201ENST00000385262 94 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 MIR526A2-201ENST00000390198 65 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNU2-59P-201ENST00000410482 191 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.01□□□□□ -2.41
FOXA1P55317 MTND4P19-201ENST00000446659 478 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RPL39P25-201ENST00000449384 154 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNU6-507P-201ENST00000516045 100 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNA5SP395-201ENST00000516567 118 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNU6-126P-201ENST00000516685 103 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 AP003733.2-201ENST00000529409 171 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 AL008718.3-201ENST00000610217 321 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.802-201ENST00000614892 130 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 AP001282.2-201ENST00000616149 309 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 MIR6759-201ENST00000638110 65 ntBASIC0.01□□□□□ -2.41
FOXA1P55317 RNU6-450P-201ENST00000364654 107 ntBASIC0□□□□□ -2.41
FOXA1P55317 Y_RNA.380-201ENST00000365663 111 ntBASIC0□□□□□ -2.41
FOXA1P55317 Y_RNA.440-201ENST00000384120 114 ntBASIC0□□□□□ -2.41
FOXA1P55317 RNU6-1009P-201ENST00000390996 107 ntBASIC0□□□□□ -2.41
FOXA1P55317 Y_RNA.645-201ENST00000391229 102 ntBASIC0□□□□□ -2.41
FOXA1P55317 SNORA26.6-201ENST00000391256 115 ntBASIC0□□□□□ -2.41
FOXA1P55317 RNU6-121P-201ENST00000410525 99 ntBASIC0□□□□□ -2.41
FOXA1P55317 AL512326.2-201ENST00000426359 151 ntBASIC0□□□□□ -2.41
FOXA1P55317 RNU7-45P-201ENST00000459460 63 ntBASIC0□□□□□ -2.41
FOXA1P55317 TRBVB-201ENST00000477100 408 ntBASIC0□□□□□ -2.41
FOXA1P55317 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0□□□□□ -2.41
FOXA1P55317 RNA5SP268-201ENST00000516828 124 ntBASIC0□□□□□ -2.41
FOXA1P55317 AC006006.1-201ENST00000603082 144 ntBASIC0□□□□□ -2.41
FOXA1P55317 MIR6717-201ENST00000622747 73 ntBASIC0□□□□□ -2.41
FOXA1P55317 SNORA25.1-201ENST00000362326 128 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.24-201ENST00000362508 103 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 SNORA42.1-201ENST00000363515 137 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.217-201ENST00000364214 105 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 RNU6-514P-201ENST00000384208 107 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 RNU6-823P-201ENST00000391042 103 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 SEPT7P4-201ENST00000437076 306 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 MTND4LP30-201ENST00000454092 297 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 Y_RNA.641-201ENST00000459414 105 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 snoU18.1-201ENST00000629629 71 ntBASIC-0.01□□□□□ -2.41
FOXA1P55317 MIR302B-201ENST00000362188 73 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNU6-403P-201ENST00000363163 104 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNA5SP214-201ENST00000363378 118 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 SNORD114-9-201ENST00000364370 72 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNU6-326P-201ENST00000365480 107 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNU6-597P-201ENST00000365620 102 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.395-201ENST00000383945 109 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 SNORA53-201ENST00000391141 249 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 AC069271.1-201ENST00000445577 156 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 RNU6-1299P-201ENST00000516316 100 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 SNORA27.4-201ENST00000516650 95 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 MIR5688-201ENST00000580619 83 ntBASIC-0.02□□□□□ -2.41
FOXA1P55317 AC037487.3-201ENST00000606668 112 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms