Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR1302-7-201ENST00000408841 72 ntBASIC1.22□□□□□ -2.21
PTPN9P43378 RNU6-394P-201ENST00000410735 107 ntBASIC1.22□□□□□ -2.21
PTPN9P43378 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.22□□□□□ -2.21
PTPN9P43378 RNU6-1053P-201ENST00000515930 101 ntBASIC1.22□□□□□ -2.21
PTPN9P43378 SNORD79.1-201ENST00000516069 84 ntBASIC1.22□□□□□ -2.21
PTPN9P43378 AC027335.2-201ENST00000624030 375 ntBASIC1.22□□□□□ -2.21
PTPN9P43378 Y_RNA.180-201ENST00000363867 113 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 Y_RNA.363-201ENST00000365529 113 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 RNU6-910P-201ENST00000390844 107 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 AL591704.2-201ENST00000421658 181 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.21□□□□□ -2.22
PTPN9P43378 SCARNA15-202ENST00000516881 127 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 SEPT14P17-201ENST00000617978 177 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 MIR6844-201ENST00000637122 62 ntBASIC1.21□□□□□ -2.22
PTPN9P43378 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
PTPN9P43378 SNORA25.8-201ENST00000364831 128 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 Y_RNA.351-201ENST00000365436 96 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 MIR618-201ENST00000385287 98 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 MT-TN-201ENST00000387400 73 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 AC074198.2-201ENST00000508153 258 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 TRMT112P2-201ENST00000512910 132 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 RN7SKP179-201ENST00000516126 217 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 MIR2115-201ENST00000516657 100 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 RNU6-958P-201ENST00000516995 106 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 MIR548AO-201ENST00000579992 96 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 AC131055.1-201ENST00000584626 316 ntBASIC1.2□□□□□ -2.22
PTPN9P43378 SNORA25.3-201ENST00000363205 127 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 RNU6-818P-201ENST00000364837 108 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 Y_RNA.464-201ENST00000384282 110 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 MIR548I3-201ENST00000408378 149 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 RNU6-613P-201ENST00000410412 108 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 RNU2-11P-201ENST00000459191 187 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 RNU7-21P-201ENST00000459430 62 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.19□□□□□ -2.22
PTPN9P43378 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 MIR8055-201ENST00000610739 97 ntBASIC1.19□□□□□ -2.22
PTPN9P43378 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.18□□□□□ -2.22
PTPN9P43378 Y_RNA.150-201ENST00000363562 102 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 RNU6-1082P-201ENST00000364574 107 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 RNU6-396P-201ENST00000365369 105 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 MIR19B1-201ENST00000384829 87 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 SNORA75.2-201ENST00000391138 150 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 SNORA75.3-201ENST00000391231 150 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 RNA5SP261-201ENST00000410536 106 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 RNU6-321P-201ENST00000410912 106 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.18□□□□□ -2.22
PTPN9P43378 RNU6-1212P-201ENST00000517023 104 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 AL020996.3-201ENST00000606617 222 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 AC091932.4-201ENST00000623386 200 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 Z97988.1-201ENST00000637697 135 ntBASIC1.18□□□□□ -2.22
PTPN9P43378 MIR377-201ENST00000362145 69 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 Y_RNA.52-201ENST00000362760 96 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNY1P10-201ENST00000363268 113 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNU6-449P-201ENST00000383914 107 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNU6-913P-201ENST00000390913 95 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNU7-90P-201ENST00000459216 62 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RPS23P4-201ENST00000487908 423 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNU6-1149P-201ENST00000516810 97 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 RNU7-70P-201ENST00000516941 66 ntBASIC1.17□□□□□ -2.22
PTPN9P43378 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
PTPN9P43378 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PTPN9P43378 MIR302B-201ENST00000362188 73 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 MIR337-201ENST00000362281 93 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 RNU1-124P-201ENST00000363861 145 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 RNU6-392P-201ENST00000364926 101 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 MIR222-201ENST00000384992 110 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 MIR3144-201ENST00000579460 79 ntBASIC1.16□□□□□ -2.22
PTPN9P43378 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
PTPN9P43378 MTND5P32-201ENST00000560711 1802 ntBASIC1.15□□□□□ -2.22
PTPN9P43378 RNU1-133P-201ENST00000364867 167 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 Y_RNA.430-201ENST00000384081 110 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 AC063976.4-201ENST00000421971 163 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 MTATP6P21-201ENST00000440681 189 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 RNA5SP236-201ENST00000516169 116 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 MIR4264-201ENST00000583520 66 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.15□□□□□ -2.23
PTPN9P43378 Y_RNA.778-201ENST00000620203 90 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 MIR6516-201ENST00000630554 81 ntBASIC1.15□□□□□ -2.23
PTPN9P43378 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
PTPN9P43378 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
PTPN9P43378 SNORA1.1-201ENST00000364671 133 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 Y_RNA.497-201ENST00000384447 98 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-1319P-201ENST00000390855 104 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-747P-201ENST00000390928 104 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 SNORD37.2-201ENST00000391075 66 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-241P-201ENST00000391148 104 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 MIR548I1-201ENST00000408810 149 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-588P-201ENST00000410281 105 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-177P-201ENST00000411257 104 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 MRPL35P3-201ENST00000421557 364 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNA5SP404-201ENST00000517118 132 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 AC091895.1-201ENST00000624494 256 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 MIR3658-201ENST00000636291 56 ntBASIC1.14□□□□□ -2.23
PTPN9P43378 RNU6-1336P-201ENST00000383886 109 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 SNORA26.6-201ENST00000391256 115 ntBASIC1.13□□□□□ -2.23
PTPN9P43378 AC002429.1-201ENST00000437672 148 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms