Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MTND1P7-201ENST00000632801 297 ntBASIC0.96□□□□□ -2.26
SOX3P41225 Y_RNA.241-201ENST00000364470 117 ntBASIC0.95□□□□□ -2.26
SOX3P41225 Y_RNA.410-201ENST00000383992 113 ntBASIC0.95□□□□□ -2.26
SOX3P41225 Y_RNA.785-201ENST00000384290 109 ntBASIC0.95□□□□□ -2.26
SOX3P41225 Y_RNA.793-201ENST00000411222 111 ntBASIC0.95□□□□□ -2.26
SOX3P41225 SNORA18.4-201ENST00000516440 124 ntBASIC0.95□□□□□ -2.26
SOX3P41225 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
SOX3P41225 MIR6504-201ENST00000613520 61 ntBASIC0.95□□□□□ -2.26
SOX3P41225 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.95□□□□□ -2.26
SOX3P41225 SEPT14P17-201ENST00000617978 177 ntBASIC0.95□□□□□ -2.26
SOX3P41225 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.95□□□□□ -2.26
SOX3P41225 SNORA22-201ENST00000383907 134 ntBASIC0.94□□□□□ -2.26
SOX3P41225 RNU6-643P-201ENST00000384018 107 ntBASIC0.94□□□□□ -2.26
SOX3P41225 SNORA22C-201ENST00000384614 134 ntBASIC0.94□□□□□ -2.26
SOX3P41225 MIR1287-201ENST00000408492 90 ntBASIC0.94□□□□□ -2.26
SOX3P41225 RNU2-64P-201ENST00000411315 191 ntBASIC0.94□□□□□ -2.26
SOX3P41225 AC063976.4-201ENST00000421971 163 ntBASIC0.94□□□□□ -2.26
SOX3P41225 MIR548AO-201ENST00000579992 96 ntBASIC0.94□□□□□ -2.26
SOX3P41225 MIR3129-201ENST00000581095 76 ntBASIC0.94□□□□□ -2.26
SOX3P41225 AC008163.1-202ENST00000636004 2889 ntBASIC0.93□□□□□ -2.26
SOX3P41225 Y_RNA.29-201ENST00000362570 113 ntBASIC0.93□□□□□ -2.26
SOX3P41225 Y_RNA.150-201ENST00000363562 102 ntBASIC0.93□□□□□ -2.26
SOX3P41225 Y_RNA.240-201ENST00000364469 95 ntBASIC0.93□□□□□ -2.26
SOX3P41225 RNU6-1189P-201ENST00000383958 107 ntBASIC0.93□□□□□ -2.26
SOX3P41225 SNORA70.7-201ENST00000384159 133 ntBASIC0.93□□□□□ -2.26
SOX3P41225 SNORA27-201ENST00000384323 126 ntBASIC0.93□□□□□ -2.26
SOX3P41225 Y_RNA.542-201ENST00000384641 111 ntBASIC0.93□□□□□ -2.26
SOX3P41225 RNU6-768P-201ENST00000384683 107 ntBASIC0.93□□□□□ -2.26
SOX3P41225 MT-TR-201ENST00000387439 65 ntBASIC0.93□□□□□ -2.26
SOX3P41225 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
SOX3P41225 RNU6-1135P-201ENST00000411083 103 ntBASIC0.93□□□□□ -2.26
SOX3P41225 AL138752.1-201ENST00000452964 351 ntBASIC0.93□□□□□ -2.26
SOX3P41225 RNU7-67P-201ENST00000459003 62 ntBASIC0.93□□□□□ -2.26
SOX3P41225 RNU7-90P-201ENST00000459216 62 ntBASIC0.93□□□□□ -2.26
SOX3P41225 snoU13.16-201ENST00000459350 104 ntBASIC0.93□□□□□ -2.26
SOX3P41225 MIR4431-201ENST00000579990 94 ntBASIC0.93□□□□□ -2.26
SOX3P41225 MIR378D2-201ENST00000580636 98 ntBASIC0.93□□□□□ -2.26
SOX3P41225 AC072026.1-201ENST00000605023 201 ntBASIC0.93□□□□□ -2.26
SOX3P41225 MIR3658-201ENST00000636291 56 ntBASIC0.93□□□□□ -2.26
SOX3P41225 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.92□□□□□ -2.26
SOX3P41225 Y_RNA.191-201ENST00000363972 113 ntBASIC0.92□□□□□ -2.26
SOX3P41225 RNU4-38P-201ENST00000364472 129 ntBASIC0.92□□□□□ -2.26
SOX3P41225 RNU6-1082P-201ENST00000364574 107 ntBASIC0.92□□□□□ -2.26
SOX3P41225 RNU6-1292P-201ENST00000383856 107 ntBASIC0.92□□□□□ -2.26
SOX3P41225 AC006461.1-201ENST00000412637 326 ntBASIC0.92□□□□□ -2.26
SOX3P41225 AC090844.1-201ENST00000422019 156 ntBASIC0.92□□□□□ -2.26
SOX3P41225 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.92□□□□□ -2.26
SOX3P41225 RNU6-958P-201ENST00000516995 106 ntBASIC0.92□□□□□ -2.26
SOX3P41225 FTX_2.1-201ENST00000618816 94 ntBASIC0.92□□□□□ -2.26
SOX3P41225 MIR6767-201ENST00000637302 66 ntBASIC0.92□□□□□ -2.26
SOX3P41225 MTND5P32-201ENST00000560711 1802 ntBASIC0.92□□□□□ -2.26
SOX3P41225 RNU1-93P-201ENST00000364704 169 ntBASIC0.91□□□□□ -2.26
SOX3P41225 SNORD114-22-201ENST00000365423 72 ntBASIC0.91□□□□□ -2.26
SOX3P41225 Y_RNA.440-201ENST00000384120 114 ntBASIC0.91□□□□□ -2.26
SOX3P41225 RNU7-73P-201ENST00000458743 63 ntBASIC0.91□□□□□ -2.26
SOX3P41225 RPS29P24-201ENST00000486345 171 ntBASIC0.91□□□□□ -2.26
SOX3P41225 SNORD116-25-201ENST00000516517 92 ntBASIC0.91□□□□□ -2.26
SOX3P41225 Y_RNA.700-201ENST00000516806 100 ntBASIC0.91□□□□□ -2.26
SOX3P41225 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.91□□□□□ -2.26
SOX3P41225 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.91□□□□□ -2.26
SOX3P41225 AL365205.2-201ENST00000594586 68 ntBASIC0.91□□□□□ -2.26
SOX3P41225 MIR6516-201ENST00000630554 81 ntBASIC0.91□□□□□ -2.26
SOX3P41225 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
SOX3P41225 RNU4-84P-201ENST00000364200 139 ntBASIC0.9□□□□□ -2.27
SOX3P41225 RNU6-312P-201ENST00000364629 107 ntBASIC0.9□□□□□ -2.27
SOX3P41225 Y_RNA.330-201ENST00000365230 109 ntBASIC0.9□□□□□ -2.27
SOX3P41225 RNU6-396P-201ENST00000365369 105 ntBASIC0.9□□□□□ -2.27
SOX3P41225 RNU6-913P-201ENST00000390913 95 ntBASIC0.9□□□□□ -2.27
SOX3P41225 RNU6-1190P-201ENST00000410811 104 ntBASIC0.9□□□□□ -2.27
SOX3P41225 MIR2115-201ENST00000516657 100 ntBASIC0.9□□□□□ -2.27
SOX3P41225 SCARNA15-202ENST00000516881 127 ntBASIC0.9□□□□□ -2.27
SOX3P41225 MIR4452-201ENST00000583004 71 ntBASIC0.9□□□□□ -2.27
SOX3P41225 MIR8055-201ENST00000610739 97 ntBASIC0.9□□□□□ -2.27
SOX3P41225 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
SOX3P41225 Y_RNA.224-201ENST00000364308 111 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU6-1130P-201ENST00000365434 107 ntBASIC0.89□□□□□ -2.27
SOX3P41225 Y_RNA.441-201ENST00000384123 112 ntBASIC0.89□□□□□ -2.27
SOX3P41225 AL035398.1-201ENST00000430869 322 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU7-96P-201ENST00000459535 64 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU7-121P-201ENST00000516604 62 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU6-113P-201ENST00000516653 101 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU7-53P-201ENST00000516705 60 ntBASIC0.89□□□□□ -2.27
SOX3P41225 RNU6-508P-201ENST00000363231 103 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-654P-201ENST00000364373 107 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-804P-201ENST00000384286 107 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-886P-201ENST00000384319 105 ntBASIC0.88□□□□□ -2.27
SOX3P41225 MIR200A-201ENST00000384875 90 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-613P-201ENST00000410412 108 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-394P-201ENST00000410735 107 ntBASIC0.88□□□□□ -2.27
SOX3P41225 HMGN1P33-201ENST00000432945 451 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU6-998P-201ENST00000515894 101 ntBASIC0.88□□□□□ -2.27
SOX3P41225 RNU2-60P-201ENST00000517290 128 ntBASIC0.88□□□□□ -2.27
SOX3P41225 MIR5197-201ENST00000583721 112 ntBASIC0.88□□□□□ -2.27
SOX3P41225 AC131055.1-201ENST00000584626 316 ntBASIC0.88□□□□□ -2.27
SOX3P41225 HSPE1P19-201ENST00000603327 295 ntBASIC0.88□□□□□ -2.27
SOX3P41225 AC104465.1-201ENST00000611365 139 ntBASIC0.88□□□□□ -2.27
SOX3P41225 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.88□□□□□ -2.27
SOX3P41225 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
SOX3P41225 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
SOX3P41225 SNORD114-24-201ENST00000365029 72 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms