Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR376A2-201ENST00000636782 80 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 RNU5F-6P-201ENST00000362979 116 ntBASIC-2□□□□□ -2.73
CUX1P39880 Y_RNA.229-201ENST00000364347 113 ntBASIC-2□□□□□ -2.73
CUX1P39880 Y_RNA.785-201ENST00000384290 109 ntBASIC-2□□□□□ -2.73
CUX1P39880 MIR487B-201ENST00000385021 84 ntBASIC-2□□□□□ -2.73
CUX1P39880 CHEK2P4-201ENST00000450340 246 ntBASIC-2□□□□□ -2.73
CUX1P39880 MTND3P7-201ENST00000474435 343 ntBASIC-2□□□□□ -2.73
CUX1P39880 AC245505.1-201ENST00000556398 224 ntBASIC-2□□□□□ -2.73
CUX1P39880 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-2□□□□□ -2.73
CUX1P39880 AL121655.1-201ENST00000605811 308 ntBASIC-2□□□□□ -2.73
CUX1P39880 AL163152.1-201ENST00000642001 374 ntBASIC-2□□□□□ -2.73
CUX1P39880 RNA5SP26-201ENST00000362406 119 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 SNORA72.3-201ENST00000365074 132 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 RNU6-746P-201ENST00000384112 109 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 HULC.1-201ENST00000612720 240 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 RNU6-164P-201ENST00000364604 103 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 Y_RNA.405-201ENST00000383979 100 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 Y_RNA.451-201ENST00000384200 100 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 Y_RNA.524-201ENST00000384564 100 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 Y_RNA.561-201ENST00000384694 100 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 AL078595.1-201ENST00000404458 226 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 MTATP6P20-201ENST00000414147 562 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 AC108019.1-201ENST00000512540 175 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 RNU6-436P-201ENST00000516171 114 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-2.01□□□□□ -2.73
CUX1P39880 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-2.01□□□□□ -2.73
CUX1P39880 AL357078.3-201ENST00000607528 618 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 AC007494.3-201ENST00000624660 743 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 snoR1.1-201ENST00000628177 80 ntBASIC-2.01□□□□□ -2.73
CUX1P39880 MIR342-201ENST00000362212 99 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 RNU4-50P-201ENST00000364361 141 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 Y_RNA.358-201ENST00000365491 99 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 RNU6-790P-201ENST00000384479 105 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 CYCSP46-201ENST00000423569 204 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 SNORD63.1-201ENST00000516178 80 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 AC006566.1-201ENST00000608943 513 ntBASIC-2.02□□□□□ -2.73
CUX1P39880 RNY1P11-201ENST00000363759 113 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 RNU6-82P-201ENST00000363970 107 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-2.03□□□□□ -2.73
CUX1P39880 RNU7-45P-201ENST00000459460 63 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 RNU6-693P-201ENST00000516134 107 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 MIR5692C1-201ENST00000585309 91 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 AC022140.2-201ENST00000623500 188 ntBASIC-2.03□□□□□ -2.73
CUX1P39880 RNU6-1233P-201ENST00000362922 102 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 RNU6-517P-201ENST00000384362 110 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 MIR1278-201ENST00000408753 81 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 MTCYBP8-201ENST00000422855 651 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-2.04□□□□□ -2.74
CUX1P39880 USP9YP23-201ENST00000455085 407 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 PCMTD1P1-201ENST00000455560 355 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 MIR4756-201ENST00000577874 78 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 MIR548AG2-201ENST00000581228 64 ntBASIC-2.04□□□□□ -2.74
CUX1P39880 Y_RNA.328-201ENST00000365208 113 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 Y_RNA.587-201ENST00000391210 103 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 RNU6-592P-201ENST00000411333 103 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 AC023449.1-201ENST00000454464 154 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 SNORD11-201ENST00000459124 84 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 RNU7-115P-201ENST00000516433 55 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-2.05□□□□□ -2.74
CUX1P39880 U6.109-201ENST00000636749 87 ntBASIC-2.05□□□□□ -2.74
CUX1P39880 RNU6-931P-201ENST00000363850 107 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 Y_RNA.634-201ENST00000364811 113 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 Y_RNA.341-201ENST00000365341 102 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 SNORD116-9-201ENST00000384000 95 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 Y_RNA.456-201ENST00000384232 111 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 SNORD116-3-201ENST00000384287 95 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 SNORD116-8-201ENST00000384365 95 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 SNORD116-7-201ENST00000384404 95 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 SNORD116-5-201ENST00000384462 95 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 UBE2V1P7-201ENST00000446395 340 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 AC097635.1-201ENST00000450678 155 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 TPTE2P5-203ENST00000458118 728 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 AC122108.2-201ENST00000611946 526 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 AL138960.2-201ENST00000625145 535 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 AC099654.13-201ENST00000639774 207 ntBASIC-2.06□□□□□ -2.74
CUX1P39880 snoU2_19.2-201ENST00000363024 80 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 Y_RNA.310-201ENST00000365063 113 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 Y_RNA.351-201ENST00000365436 96 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 Y_RNA.436-201ENST00000384097 102 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 RNU6-1246P-201ENST00000391064 107 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 RNU6-710P-201ENST00000410424 105 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 RNU6-189P-201ENST00000516120 101 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 RNU6-118P-201ENST00000516552 102 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 SNORD36C-201ENST00000516733 66 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 MIR548AY-201ENST00000617669 107 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 SNORD115-19-201ENST00000363098 82 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 Y_RNA.106-201ENST00000363189 100 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 SNORD115-18-201ENST00000363293 82 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 SNORD115-17-201ENST00000364612 82 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 SNORD115-20-201ENST00000365099 82 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 AC127455.1-201ENST00000565496 145 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 AC092954.2-201ENST00000609103 430 ntBASIC-2.07□□□□□ -2.74
CUX1P39880 Y_RNA.10-201ENST00000362371 110 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 Y_RNA.14-201ENST00000362415 103 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 RNU6-660P-201ENST00000364566 109 ntBASIC-2.08□□□□□ -2.74
CUX1P39880 RNY1P2-201ENST00000364820 117 ntBASIC-2.08□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms