Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNORD115-12-201ENST00000362583 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-29-201ENST00000362834 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-9-201ENST00000362912 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-21-201ENST00000362963 81 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-14-201ENST00000363090 81 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-13-201ENST00000363358 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-41-201ENST00000363608 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-11-201ENST00000363616 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-5-201ENST00000363633 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-39-201ENST00000363694 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-4-201ENST00000363810 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-16-201ENST00000363887 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-6-201ENST00000363942 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-42-201ENST00000364273 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-15-201ENST00000364809 81 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-1-201ENST00000364961 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-26-201ENST00000365067 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-10-201ENST00000365073 81 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-43-201ENST00000365503 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-36-201ENST00000365629 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 MIR570-201ENST00000384917 97 ntBASIC1.48□□□□□ -2.17
CIITAP33076 Y_RNA.584-201ENST00000391090 114 ntBASIC1.48□□□□□ -2.17
CIITAP33076 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.48□□□□□ -2.17
CIITAP33076 MTND4LP9-201ENST00000427694 174 ntBASIC1.48□□□□□ -2.17
CIITAP33076 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.48□□□□□ -2.17
CIITAP33076 RNU6-1149P-201ENST00000516810 97 ntBASIC1.48□□□□□ -2.17
CIITAP33076 AC068338.1-201ENST00000565567 176 ntBASIC1.48□□□□□ -2.17
CIITAP33076 SNORD115-40-201ENST00000606510 82 ntBASIC1.48□□□□□ -2.17
CIITAP33076 AP001340.1-201ENST00000624405 217 ntBASIC1.48□□□□□ -2.17
CIITAP33076 AC010332.2-201ENST00000613083 1904 ntBASIC1.48□□□□□ -2.17
CIITAP33076 Y_RNA.241-201ENST00000364470 117 ntBASIC1.47□□□□□ -2.17
CIITAP33076 Y_RNA.370-201ENST00000365589 108 ntBASIC1.47□□□□□ -2.17
CIITAP33076 SNORA24-201ENST00000384096 131 ntBASIC1.47□□□□□ -2.17
CIITAP33076 RNU6-42P-201ENST00000384165 107 ntBASIC1.47□□□□□ -2.17
CIITAP33076 Y_RNA.586-201ENST00000391146 98 ntBASIC1.47□□□□□ -2.17
CIITAP33076 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.47□□□□□ -2.17
CIITAP33076 AC090821.2-201ENST00000523552 176 ntBASIC1.47□□□□□ -2.17
CIITAP33076 MIR4764-201ENST00000580680 88 ntBASIC1.47□□□□□ -2.17
CIITAP33076 AL353770.2-201ENST00000620024 78 ntBASIC1.47□□□□□ -2.17
CIITAP33076 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.47□□□□□ -2.17
CIITAP33076 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CIITAP33076 Y_RNA.120-201ENST00000363304 110 ntBASIC1.46□□□□□ -2.18
CIITAP33076 RNU6-309P-201ENST00000364573 106 ntBASIC1.46□□□□□ -2.18
CIITAP33076 Y_RNA.327-201ENST00000365201 102 ntBASIC1.46□□□□□ -2.18
CIITAP33076 Y_RNA.343-201ENST00000365354 112 ntBASIC1.46□□□□□ -2.18
CIITAP33076 SNORA27-201ENST00000384323 126 ntBASIC1.46□□□□□ -2.18
CIITAP33076 RPS27P16-201ENST00000425758 201 ntBASIC1.46□□□□□ -2.18
CIITAP33076 Y_RNA.651-201ENST00000459380 103 ntBASIC1.46□□□□□ -2.18
CIITAP33076 RNU7-41P-201ENST00000515917 61 ntBASIC1.46□□□□□ -2.18
CIITAP33076 AC019176.1-201ENST00000518519 225 ntBASIC1.46□□□□□ -2.18
CIITAP33076 MIR3910-1-201ENST00000580936 111 ntBASIC1.46□□□□□ -2.18
CIITAP33076 MIR3192-201ENST00000584920 77 ntBASIC1.46□□□□□ -2.18
CIITAP33076 AL078603.1-201ENST00000603824 313 ntBASIC1.46□□□□□ -2.18
CIITAP33076 AL096861.1-201ENST00000610899 123 ntBASIC1.46□□□□□ -2.18
CIITAP33076 MIR6504-201ENST00000613520 61 ntBASIC1.46□□□□□ -2.18
CIITAP33076 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.46□□□□□ -2.18
CIITAP33076 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.45□□□□□ -2.18
CIITAP33076 RNU6-915P-201ENST00000364943 103 ntBASIC1.45□□□□□ -2.18
CIITAP33076 AL451046.2-201ENST00000403074 277 ntBASIC1.45□□□□□ -2.18
CIITAP33076 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.45□□□□□ -2.18
CIITAP33076 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.45□□□□□ -2.18
CIITAP33076 RNU6-322P-201ENST00000516010 103 ntBASIC1.45□□□□□ -2.18
CIITAP33076 RNA5SP220-201ENST00000516298 104 ntBASIC1.45□□□□□ -2.18
CIITAP33076 RNU7-43P-201ENST00000516554 64 ntBASIC1.45□□□□□ -2.18
CIITAP33076 RNU6-165P-201ENST00000517170 99 ntBASIC1.45□□□□□ -2.18
CIITAP33076 MIR4791-201ENST00000607666 84 ntBASIC1.45□□□□□ -2.18
CIITAP33076 MIR7974-201ENST00000615835 79 ntBASIC1.45□□□□□ -2.18
CIITAP33076 Y_RNA.280-201ENST00000364765 112 ntBASIC1.44□□□□□ -2.18
CIITAP33076 SNORD26-201ENST00000384147 75 ntBASIC1.44□□□□□ -2.18
CIITAP33076 AL603914.1-201ENST00000401964 204 ntBASIC1.44□□□□□ -2.18
CIITAP33076 RPS29P24-201ENST00000486345 171 ntBASIC1.44□□□□□ -2.18
CIITAP33076 RNU6-998P-201ENST00000515894 101 ntBASIC1.44□□□□□ -2.18
CIITAP33076 MIR3121-201ENST00000579680 77 ntBASIC1.44□□□□□ -2.18
CIITAP33076 GHRLOS.1-201ENST00000610995 70 ntBASIC1.44□□□□□ -2.18
CIITAP33076 AC091932.4-201ENST00000623386 200 ntBASIC1.44□□□□□ -2.18
CIITAP33076 Y_RNA.294-201ENST00000364916 102 ntBASIC1.43□□□□□ -2.18
CIITAP33076 SNORA1.2-201ENST00000365189 134 ntBASIC1.43□□□□□ -2.18
CIITAP33076 Y_RNA.351-201ENST00000365436 96 ntBASIC1.43□□□□□ -2.18
CIITAP33076 MIR520C-201ENST00000385005 87 ntBASIC1.43□□□□□ -2.18
CIITAP33076 AP001328.1-201ENST00000528550 176 ntBASIC1.43□□□□□ -2.18
CIITAP33076 MIR3664-201ENST00000579074 99 ntBASIC1.43□□□□□ -2.18
CIITAP33076 AL157834.3-201ENST00000615543 103 ntBASIC1.43□□□□□ -2.18
CIITAP33076 AC008133.2-201ENST00000624540 351 ntBASIC1.43□□□□□ -2.18
CIITAP33076 Y_RNA.191-201ENST00000363972 113 ntBASIC1.42□□□□□ -2.18
CIITAP33076 RNU6-392P-201ENST00000364926 101 ntBASIC1.42□□□□□ -2.18
CIITAP33076 RNU6-81P-201ENST00000365608 104 ntBASIC1.42□□□□□ -2.18
CIITAP33076 Y_RNA.537-201ENST00000384626 109 ntBASIC1.42□□□□□ -2.18
CIITAP33076 MIR7-2-201ENST00000384970 110 ntBASIC1.42□□□□□ -2.18
CIITAP33076 RNU6-913P-201ENST00000390913 95 ntBASIC1.42□□□□□ -2.18
CIITAP33076 SNORD111.1-201ENST00000516421 86 ntBASIC1.42□□□□□ -2.18
CIITAP33076 RNU6-406P-201ENST00000516470 107 ntBASIC1.42□□□□□ -2.18
CIITAP33076 Y_RNA.690-201ENST00000516603 95 ntBASIC1.42□□□□□ -2.18
CIITAP33076 AL512310.8-201ENST00000550183 120 ntBASIC1.42□□□□□ -2.18
CIITAP33076 HSPE1P19-201ENST00000603327 295 ntBASIC1.42□□□□□ -2.18
CIITAP33076 AC243994.1-201ENST00000618627 109 ntBASIC1.42□□□□□ -2.18
CIITAP33076 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CIITAP33076 RNU6-349P-201ENST00000362402 107 ntBASIC1.41□□□□□ -2.18
CIITAP33076 SNORA40-201ENST00000388090 126 ntBASIC1.41□□□□□ -2.18
CIITAP33076 RNU4-61P-201ENST00000411243 107 ntBASIC1.41□□□□□ -2.18
CIITAP33076 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms