Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU6-473P-201ENST00000516164 107 ntBASIC-0.11□□□□□ -2.43
USF1P22415 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.11□□□□□ -2.43
USF1P22415 RNU6-135P-201ENST00000516769 101 ntBASIC-0.11□□□□□ -2.43
USF1P22415 AC040926.1-201ENST00000530195 238 ntBASIC-0.11□□□□□ -2.43
USF1P22415 PART1_1.1-201ENST00000611761 217 ntBASIC-0.11□□□□□ -2.43
USF1P22415 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.12□□□□□ -2.43
USF1P22415 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.12□□□□□ -2.43
USF1P22415 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.12□□□□□ -2.43
USF1P22415 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.12□□□□□ -2.43
USF1P22415 PCNPP3-201ENST00000393579 471 ntBASIC-0.12□□□□□ -2.43
USF1P22415 RNU6-976P-201ENST00000516086 111 ntBASIC-0.12□□□□□ -2.43
USF1P22415 RNU6-504P-201ENST00000516568 104 ntBASIC-0.12□□□□□ -2.43
USF1P22415 MIR5589-201ENST00000579442 60 ntBASIC-0.12□□□□□ -2.43
USF1P22415 MIR4636-201ENST00000582271 80 ntBASIC-0.12□□□□□ -2.43
USF1P22415 MIR6828-201ENST00000636181 60 ntBASIC-0.12□□□□□ -2.43
USF1P22415 Y_RNA.5-201ENST00000362334 102 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.424-201ENST00000384063 103 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.569-201ENST00000384749 103 ntBASIC-0.13□□□□□ -2.43
USF1P22415 MIR610-201ENST00000385139 96 ntBASIC-0.13□□□□□ -2.43
USF1P22415 MIR1912-201ENST00000410389 80 ntBASIC-0.13□□□□□ -2.43
USF1P22415 RNA5SP261-201ENST00000410536 106 ntBASIC-0.13□□□□□ -2.43
USF1P22415 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.13□□□□□ -2.43
USF1P22415 AC138393.2-201ENST00000414742 246 ntBASIC-0.13□□□□□ -2.43
USF1P22415 HSPE1P25-201ENST00000455484 251 ntBASIC-0.13□□□□□ -2.43
USF1P22415 RNU6-475P-201ENST00000516073 104 ntBASIC-0.13□□□□□ -2.43
USF1P22415 RNU6-1270P-201ENST00000517128 108 ntBASIC-0.13□□□□□ -2.43
USF1P22415 MIR7107-201ENST00000611489 80 ntBASIC-0.13□□□□□ -2.43
USF1P22415 uc_338.22-201ENST00000622722 187 ntBASIC-0.13□□□□□ -2.43
USF1P22415 MIR6717-201ENST00000622747 73 ntBASIC-0.13□□□□□ -2.43
USF1P22415 RNU4-90P-201ENST00000362773 141 ntBASIC-0.14□□□□□ -2.43
USF1P22415 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.14□□□□□ -2.43
USF1P22415 RNU6-127P-201ENST00000390897 107 ntBASIC-0.14□□□□□ -2.43
USF1P22415 MIR548H2-201ENST00000408874 88 ntBASIC-0.14□□□□□ -2.43
USF1P22415 RNA5SP237-201ENST00000410414 113 ntBASIC-0.14□□□□□ -2.43
USF1P22415 Y_RNA.632-201ENST00000459189 102 ntBASIC-0.14□□□□□ -2.43
USF1P22415 RNU6-1046P-201ENST00000516538 107 ntBASIC-0.14□□□□□ -2.43
USF1P22415 RNA5SP476-201ENST00000516613 103 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AP003733.2-201ENST00000529409 171 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AC141557.1-201ENST00000540982 400 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.14□□□□□ -2.43
USF1P22415 MIR5688-201ENST00000580619 83 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AL360085.1-201ENST00000604713 532 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AL132765.2-201ENST00000610812 351 ntBASIC-0.14□□□□□ -2.43
USF1P22415 AP001282.2-201ENST00000616149 309 ntBASIC-0.14□□□□□ -2.43
USF1P22415 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.15□□□□□ -2.43
USF1P22415 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.70-201ENST00000362886 110 ntBASIC-0.15□□□□□ -2.43
USF1P22415 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.15□□□□□ -2.43
USF1P22415 MIR526A2-201ENST00000390198 65 ntBASIC-0.15□□□□□ -2.43
USF1P22415 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.15□□□□□ -2.43
USF1P22415 SNORA26-201ENST00000391286 122 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.602-201ENST00000410535 92 ntBASIC-0.15□□□□□ -2.43
USF1P22415 AF228730.3-201ENST00000436691 102 ntBASIC-0.15□□□□□ -2.43
USF1P22415 SNORD19B-201ENST00000459623 84 ntBASIC-0.15□□□□□ -2.43
USF1P22415 RNU6-397P-201ENST00000516226 104 ntBASIC-0.15□□□□□ -2.43
USF1P22415 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.15□□□□□ -2.43
USF1P22415 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-0.15□□□□□ -2.43
USF1P22415 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.15□□□□□ -2.43
USF1P22415 MIR4802-201ENST00000581881 80 ntBASIC-0.15□□□□□ -2.43
USF1P22415 MIR6082-201ENST00000613604 109 ntBASIC-0.15□□□□□ -2.43
USF1P22415 MIR376A1-201ENST00000616574 68 ntBASIC-0.15□□□□□ -2.43
USF1P22415 AL662814.1-201ENST00000617364 121 ntBASIC-0.15□□□□□ -2.43
USF1P22415 MIR6086-201ENST00000638065 55 ntBASIC-0.15□□□□□ -2.43
USF1P22415 AC091304.10-201ENST00000641554 121 ntBASIC-0.15□□□□□ -2.43
USF1P22415 MIR302B-201ENST00000362188 73 ntBASIC-0.16□□□□□ -2.44
USF1P22415 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-653P-201ENST00000363074 106 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-403P-201ENST00000363163 104 ntBASIC-0.16□□□□□ -2.44
USF1P22415 SNORA32.1-201ENST00000364514 115 ntBASIC-0.16□□□□□ -2.44
USF1P22415 SNORA2A-201ENST00000383885 135 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-187P-201ENST00000384139 106 ntBASIC-0.16□□□□□ -2.44
USF1P22415 Y_RNA.445-201ENST00000384168 102 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-102P-201ENST00000384485 104 ntBASIC-0.16□□□□□ -2.44
USF1P22415 SNORA26.6-201ENST00000391256 115 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.16□□□□□ -2.44
USF1P22415 SUMO1P3-201ENST00000439961 304 ntBASIC-0.16□□□□□ -2.44
USF1P22415 MTND4LP30-201ENST00000454092 297 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNU6-765P-201ENST00000516916 99 ntBASIC-0.16□□□□□ -2.44
USF1P22415 RNA5SP47-201ENST00000517230 109 ntBASIC-0.16□□□□□ -2.44
USF1P22415 IGLVI-20-201ENST00000519296 130 ntBASIC-0.16□□□□□ -2.44
USF1P22415 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.17□□□□□ -2.44
USF1P22415 MIR342-201ENST00000362212 99 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR145-201ENST00000384967 88 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR1302-11-201ENST00000408051 138 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR1302-9-201ENST00000408365 138 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR1265-201ENST00000408444 86 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR1302-10-201ENST00000408734 138 ntBASIC-0.17□□□□□ -2.44
USF1P22415 PMCHL1-202ENST00000423102 261 ntBASIC-0.17□□□□□ -2.44
USF1P22415 SNORA31.14-201ENST00000516728 116 ntBASIC-0.17□□□□□ -2.44
USF1P22415 MIR1302-2-201ENST00000607096 138 ntBASIC-0.17□□□□□ -2.44
USF1P22415 AC006157.1-201ENST00000611750 366 ntBASIC-0.17□□□□□ -2.44
USF1P22415 Y_RNA.802-201ENST00000614892 130 ntBASIC-0.17□□□□□ -2.44
USF1P22415 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms