Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC010332.2-201ENST00000613083 1904 ntBASIC0.5□□□□□ -2.33
SDC1P18827 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
SDC1P18827 Y_RNA.23-201ENST00000362496 106 ntBASIC0.5□□□□□ -2.33
SDC1P18827 RNU6-653P-201ENST00000363074 106 ntBASIC0.5□□□□□ -2.33
SDC1P18827 Y_RNA.238-201ENST00000364441 102 ntBASIC0.5□□□□□ -2.33
SDC1P18827 SNORA63C-201ENST00000364578 129 ntBASIC0.5□□□□□ -2.33
SDC1P18827 SNORA1.1-201ENST00000364671 133 ntBASIC0.5□□□□□ -2.33
SDC1P18827 RNU6-1189P-201ENST00000383958 107 ntBASIC0.5□□□□□ -2.33
SDC1P18827 Y_RNA.410-201ENST00000383992 113 ntBASIC0.5□□□□□ -2.33
SDC1P18827 SNORA1-201ENST00000384107 130 ntBASIC0.5□□□□□ -2.33
SDC1P18827 SNORD77.3-201ENST00000391113 65 ntBASIC0.5□□□□□ -2.33
SDC1P18827 Y_RNA.679-201ENST00000516416 91 ntBASIC0.5□□□□□ -2.33
SDC1P18827 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
SDC1P18827 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.5□□□□□ -2.33
SDC1P18827 MIR4714-201ENST00000580728 77 ntBASIC0.5□□□□□ -2.33
SDC1P18827 MIR4804-201ENST00000581683 73 ntBASIC0.5□□□□□ -2.33
SDC1P18827 MIR4676-201ENST00000583078 72 ntBASIC0.5□□□□□ -2.33
SDC1P18827 Y_RNA.7-201ENST00000362352 102 ntBASIC0.49□□□□□ -2.33
SDC1P18827 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
SDC1P18827 Y_RNA.199-201ENST00000364014 102 ntBASIC0.49□□□□□ -2.33
SDC1P18827 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
SDC1P18827 Y_RNA.396-201ENST00000383949 103 ntBASIC0.49□□□□□ -2.33
SDC1P18827 SNORA36.2-201ENST00000384004 127 ntBASIC0.49□□□□□ -2.33
SDC1P18827 Y_RNA.416-201ENST00000384014 113 ntBASIC0.49□□□□□ -2.33
SDC1P18827 MIR588-201ENST00000384900 83 ntBASIC0.49□□□□□ -2.33
SDC1P18827 MIR1287-201ENST00000408492 90 ntBASIC0.49□□□□□ -2.33
SDC1P18827 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
SDC1P18827 RNU6-561P-201ENST00000516222 102 ntBASIC0.49□□□□□ -2.33
SDC1P18827 MIR4643-201ENST00000577473 78 ntBASIC0.49□□□□□ -2.33
SDC1P18827 uc_338.17-201ENST00000619633 179 ntBASIC0.49□□□□□ -2.33
SDC1P18827 MIR6734-201ENST00000621166 68 ntBASIC0.49□□□□□ -2.33
SDC1P18827 U6.104-201ENST00000637979 90 ntBASIC0.49□□□□□ -2.33
SDC1P18827 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.49□□□□□ -2.33
SDC1P18827 MIR342-201ENST00000362212 99 ntBASIC0.48□□□□□ -2.33
SDC1P18827 RNU6-1309P-201ENST00000363305 108 ntBASIC0.48□□□□□ -2.33
SDC1P18827 MIR606-201ENST00000384851 96 ntBASIC0.48□□□□□ -2.33
SDC1P18827 RNU6-1165P-201ENST00000410119 107 ntBASIC0.48□□□□□ -2.33
SDC1P18827 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
SDC1P18827 RNA5SP220-201ENST00000516298 104 ntBASIC0.48□□□□□ -2.33
SDC1P18827 RNU4-54P-201ENST00000516428 129 ntBASIC0.48□□□□□ -2.33
SDC1P18827 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.48□□□□□ -2.33
SDC1P18827 Y_RNA.226-201ENST00000364337 114 ntBASIC0.47□□□□□ -2.33
SDC1P18827 RNU4-17P-201ENST00000365598 141 ntBASIC0.47□□□□□ -2.33
SDC1P18827 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.47□□□□□ -2.33
SDC1P18827 RNU7-56P-201ENST00000458744 62 ntBASIC0.47□□□□□ -2.33
SDC1P18827 snoU13.2-201ENST00000459201 104 ntBASIC0.47□□□□□ -2.33
SDC1P18827 AL117187.1-201ENST00000555482 181 ntBASIC0.47□□□□□ -2.33
SDC1P18827 AC011921.3-201ENST00000605540 361 ntBASIC0.47□□□□□ -2.33
SDC1P18827 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
SDC1P18827 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SDC1P18827 Y_RNA.352-201ENST00000365439 102 ntBASIC0.46□□□□□ -2.34
SDC1P18827 MIR563-201ENST00000385080 79 ntBASIC0.46□□□□□ -2.34
SDC1P18827 SNORD12C-201ENST00000386307 89 ntBASIC0.46□□□□□ -2.34
SDC1P18827 SNORA26.6-201ENST00000391256 115 ntBASIC0.46□□□□□ -2.34
SDC1P18827 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.46□□□□□ -2.34
SDC1P18827 MIR18B-201ENST00000454574 71 ntBASIC0.46□□□□□ -2.34
SDC1P18827 RNU7-45P-201ENST00000459460 63 ntBASIC0.46□□□□□ -2.34
SDC1P18827 RNA5SP121-201ENST00000516537 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 MIR5000-201ENST00000577717 103 ntBASIC0.46□□□□□ -2.34
SDC1P18827 MIR3129-201ENST00000581095 76 ntBASIC0.46□□□□□ -2.34
SDC1P18827 AC008737.2-201ENST00000599446 118 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.812-201ENST00000610788 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.784-201ENST00000613803 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.787-201ENST00000616522 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.780-201ENST00000617336 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.801-201ENST00000619005 101 ntBASIC0.46□□□□□ -2.34
SDC1P18827 Y_RNA.76-201ENST00000362931 109 ntBASIC0.45□□□□□ -2.34
SDC1P18827 SNORA63-201ENST00000363450 132 ntBASIC0.45□□□□□ -2.34
SDC1P18827 Y_RNA.145-201ENST00000363527 102 ntBASIC0.45□□□□□ -2.34
SDC1P18827 Y_RNA.176-201ENST00000363815 109 ntBASIC0.45□□□□□ -2.34
SDC1P18827 Y_RNA.277-201ENST00000364754 102 ntBASIC0.45□□□□□ -2.34
SDC1P18827 RNU6-1237P-201ENST00000384777 107 ntBASIC0.45□□□□□ -2.34
SDC1P18827 MIR140-201ENST00000385282 100 ntBASIC0.45□□□□□ -2.34
SDC1P18827 RNU2-38P-201ENST00000410856 79 ntBASIC0.45□□□□□ -2.34
SDC1P18827 RNA5SP247-201ENST00000411181 105 ntBASIC0.45□□□□□ -2.34
SDC1P18827 RNU6-1223P-201ENST00000517124 104 ntBASIC0.45□□□□□ -2.34
SDC1P18827 AC018659.1-201ENST00000551083 169 ntBASIC0.45□□□□□ -2.34
SDC1P18827 MIR3612-201ENST00000579753 87 ntBASIC0.45□□□□□ -2.34
SDC1P18827 AL442067.1-201ENST00000613261 223 ntBASIC0.45□□□□□ -2.34
SDC1P18827 MIR30D-201ENST00000362283 70 ntBASIC0.44□□□□□ -2.34
SDC1P18827 MIR18A-201ENST00000362310 71 ntBASIC0.44□□□□□ -2.34
SDC1P18827 Y_RNA.54-201ENST00000362766 105 ntBASIC0.44□□□□□ -2.34
SDC1P18827 Y_RNA.262-201ENST00000364641 102 ntBASIC0.44□□□□□ -2.34
SDC1P18827 RNU6-728P-201ENST00000365375 104 ntBASIC0.44□□□□□ -2.34
SDC1P18827 Y_RNA.351-201ENST00000365436 96 ntBASIC0.44□□□□□ -2.34
SDC1P18827 Y_RNA.542-201ENST00000384641 111 ntBASIC0.44□□□□□ -2.34
SDC1P18827 MIR938-201ENST00000401216 83 ntBASIC0.44□□□□□ -2.34
SDC1P18827 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.44□□□□□ -2.34
SDC1P18827 RNU7-185P-201ENST00000459215 60 ntBASIC0.44□□□□□ -2.34
SDC1P18827 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.44□□□□□ -2.34
SDC1P18827 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.44□□□□□ -2.34
SDC1P18827 MIR5197-201ENST00000583721 112 ntBASIC0.44□□□□□ -2.34
SDC1P18827 AC008608.1-201ENST00000603910 127 ntBASIC0.44□□□□□ -2.34
SDC1P18827 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.44□□□□□ -2.34
SDC1P18827 MIR6717-201ENST00000622747 73 ntBASIC0.44□□□□□ -2.34
SDC1P18827 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.44□□□□□ -2.34
SDC1P18827 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
SDC1P18827 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
SDC1P18827 Y_RNA.47-201ENST00000362697 108 ntBASIC0.43□□□□□ -2.34
SDC1P18827 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms