Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 RNU6-1289P-201ENST00000384431 106 ntBASIC0.1□□□□□ -2.39
RAB3DO95716 Y_RNA.527-201ENST00000384573 102 ntBASIC0.1□□□□□ -2.39
RAB3DO95716 RNA5SP299-201ENST00000391203 116 ntBASIC0.1□□□□□ -2.39
RAB3DO95716 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.1□□□□□ -2.39
RAB3DO95716 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.1□□□□□ -2.39
RAB3DO95716 MIR5688-201ENST00000580619 83 ntBASIC0.1□□□□□ -2.39
RAB3DO95716 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.1□□□□□ -2.39
RAB3DO95716 UBE2WP1-201ENST00000362030 340 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 Y_RNA.42-201ENST00000362660 108 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 Y_RNA.84-201ENST00000363011 104 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 SNORA22B-201ENST00000383876 138 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 Y_RNA.509-201ENST00000384506 99 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 RNU6-126P-201ENST00000516685 103 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 RNU6-453P-201ENST00000516819 85 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.09□□□□□ -2.4
RAB3DO95716 MIR302B-201ENST00000362188 73 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 Y_RNA.13-201ENST00000362403 112 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 Y_RNA.23-201ENST00000362496 106 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 snoU2_19.4-201ENST00000364329 80 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 Y_RNA.351-201ENST00000365436 96 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 RNU6-651P-201ENST00000411040 105 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 SERF1AP1-201ENST00000514575 187 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 RNU6-988P-201ENST00000519081 107 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 AC069113.3-201ENST00000521019 150 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 AC113195.1-201ENST00000579952 141 ntBASIC0.08□□□□□ -2.4
RAB3DO95716 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.08□□□□□ -2.4
RAB3DO95716 RNA5SP432-201ENST00000362480 116 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 RNU6-403P-201ENST00000363163 104 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 Y_RNA.216-201ENST00000364205 93 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 Y_RNA.354-201ENST00000365448 111 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 Y_RNA.432-201ENST00000384087 111 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 Y_RNA.455-201ENST00000384230 98 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 MIR23A-201ENST00000385245 73 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 U8.15-201ENST00000390947 134 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 SNORA26-201ENST00000391286 122 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 RNA5SP237-201ENST00000410414 113 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 RNU2-55P-201ENST00000411146 174 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 RNU6-1338P-201ENST00000516328 91 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 SNORA4-201ENST00000584302 138 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 AL662814.1-201ENST00000617364 121 ntBASIC0.07□□□□□ -2.4
RAB3DO95716 Y_RNA.32-201ENST00000362589 110 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 Y_RNA.138-201ENST00000363462 102 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 Y_RNA.275-201ENST00000364726 110 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 Y_RNA.276-201ENST00000364732 109 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 SNORD114-22-201ENST00000365423 72 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 AL606845.1-201ENST00000404881 255 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 AL512326.2-201ENST00000426359 151 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 AC069271.1-201ENST00000445577 156 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 RNA5SP268-201ENST00000516828 124 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 MIR5000-201ENST00000577717 103 ntBASIC0.06□□□□□ -2.4
RAB3DO95716 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
RAB3DO95716 AL596211.1-201ENST00000569873 2277 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 RNU6-653P-201ENST00000363074 106 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 Y_RNA.199-201ENST00000364014 102 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 RNU5E-4P-201ENST00000364931 120 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 Y_RNA.588-201ENST00000391254 102 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 AC022028.1-201ENST00000412054 408 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 RPL39P25-201ENST00000449384 154 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.05□□□□□ -2.4
RAB3DO95716 RNU6-561P-201ENST00000516222 102 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 RNU6-469P-201ENST00000516253 101 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 RNA5SP153-201ENST00000516498 76 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 AC112693.2-201ENST00000556538 232 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 MIR3129-201ENST00000581095 76 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 AC097639.2-201ENST00000603159 172 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 MIR6513-201ENST00000621188 64 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 AL160413.1-201ENST00000622780 310 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 MIR4315-1-201ENST00000636800 73 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 MIR4315-2-201ENST00000640925 73 ntBASIC0.05□□□□□ -2.4
RAB3DO95716 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
RAB3DO95716 Y_RNA.153-201ENST00000363615 91 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 Y_RNA.158-201ENST00000363651 101 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 MIR548J-201ENST00000408833 112 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 RNU2-59P-201ENST00000410482 191 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 RNU6-1203P-201ENST00000410703 110 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 AC096949.1-201ENST00000412047 152 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 SUMO1P3-201ENST00000439961 304 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 SNORA31.14-201ENST00000516728 116 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 Y_RNA.711-201ENST00000516993 102 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 RNU6-570P-201ENST00000517051 105 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 RNU6-1137P-201ENST00000517073 99 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 MIR4680-201ENST00000580906 66 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 MIR4491-201ENST00000581087 68 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 MIR6082-201ENST00000613604 109 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 MIR6788-201ENST00000618842 66 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 AC091932.4-201ENST00000623386 200 ntBASIC0.04□□□□□ -2.4
RAB3DO95716 Y_RNA.128-201ENST00000363391 112 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 SNORA42.1-201ENST00000363515 137 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 AP003327.1-201ENST00000529684 127 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 AC141846.1-201ENST00000568348 142 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 MIR4711-201ENST00000578274 70 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 MIR5197-201ENST00000583721 112 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 MIR7107-201ENST00000611489 80 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 MIR6755-201ENST00000619993 66 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.03□□□□□ -2.4
RAB3DO95716 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
RAB3DO95716 RNY3P5-201ENST00000384127 102 ntBASIC0.02□□□□□ -2.41
RAB3DO95716 MIR616-201ENST00000385293 97 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms