Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 RNU6-1187P-201ENST00000364771 110 ntBASIC0.93□□□□□ -2.26
SSX4O60224 Y_RNA.466-201ENST00000384294 113 ntBASIC0.93□□□□□ -2.26
SSX4O60224 SNORA2B-201ENST00000384583 137 ntBASIC0.93□□□□□ -2.26
SSX4O60224 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
SSX4O60224 RNU6-913P-201ENST00000390913 95 ntBASIC0.93□□□□□ -2.26
SSX4O60224 SNORD111-201ENST00000408139 94 ntBASIC0.93□□□□□ -2.26
SSX4O60224 AC090844.1-201ENST00000422019 156 ntBASIC0.93□□□□□ -2.26
SSX4O60224 RNU7-73P-201ENST00000458743 63 ntBASIC0.93□□□□□ -2.26
SSX4O60224 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
SSX4O60224 RNU6-113P-201ENST00000516653 101 ntBASIC0.93□□□□□ -2.26
SSX4O60224 AC012676.2-201ENST00000619258 186 ntBASIC0.93□□□□□ -2.26
SSX4O60224 MIR6515-201ENST00000619843 57 ntBASIC0.93□□□□□ -2.26
SSX4O60224 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.93□□□□□ -2.26
SSX4O60224 Y_RNA.182-201ENST00000363880 111 ntBASIC0.92□□□□□ -2.26
SSX4O60224 Y_RNA.200-201ENST00000364018 102 ntBASIC0.92□□□□□ -2.26
SSX4O60224 Y_RNA.440-201ENST00000384120 114 ntBASIC0.92□□□□□ -2.26
SSX4O60224 RNU6-125P-201ENST00000384505 107 ntBASIC0.92□□□□□ -2.26
SSX4O60224 RNU4-70P-201ENST00000384579 139 ntBASIC0.92□□□□□ -2.26
SSX4O60224 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.92□□□□□ -2.26
SSX4O60224 AL035398.1-201ENST00000430869 322 ntBASIC0.92□□□□□ -2.26
SSX4O60224 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.92□□□□□ -2.26
SSX4O60224 AL138752.1-201ENST00000452964 351 ntBASIC0.92□□□□□ -2.26
SSX4O60224 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.92□□□□□ -2.26
SSX4O60224 RNU7-53P-201ENST00000516705 60 ntBASIC0.92□□□□□ -2.26
SSX4O60224 RNU6-94P-201ENST00000607728 107 ntBASIC0.92□□□□□ -2.26
SSX4O60224 Y_RNA.489-201ENST00000384410 101 ntBASIC0.91□□□□□ -2.26
SSX4O60224 Y_RNA.542-201ENST00000384641 111 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MT-TN-201ENST00000387400 73 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MIR548J-201ENST00000408833 112 ntBASIC0.91□□□□□ -2.26
SSX4O60224 RNU7-96P-201ENST00000459535 64 ntBASIC0.91□□□□□ -2.26
SSX4O60224 PDCD5P2-201ENST00000507570 312 ntBASIC0.91□□□□□ -2.26
SSX4O60224 RNU6-998P-201ENST00000515894 101 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MIR378D2-201ENST00000580636 98 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MIR151B-201ENST00000584249 96 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MIR6788-201ENST00000618842 66 ntBASIC0.91□□□□□ -2.26
SSX4O60224 MIR376A2-201ENST00000636782 80 ntBASIC0.91□□□□□ -2.26
SSX4O60224 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
SSX4O60224 MIR342-201ENST00000362212 99 ntBASIC0.9□□□□□ -2.27
SSX4O60224 MIR411-201ENST00000362239 96 ntBASIC0.9□□□□□ -2.27
SSX4O60224 Y_RNA.83-201ENST00000363005 113 ntBASIC0.9□□□□□ -2.27
SSX4O60224 Y_RNA.168-201ENST00000363740 102 ntBASIC0.9□□□□□ -2.27
SSX4O60224 RNU6-918P-201ENST00000391219 106 ntBASIC0.9□□□□□ -2.27
SSX4O60224 FABP5P4-201ENST00000437203 171 ntBASIC0.9□□□□□ -2.27
SSX4O60224 RNU2-11P-201ENST00000459191 187 ntBASIC0.9□□□□□ -2.27
SSX4O60224 SNORD116-25-201ENST00000516517 92 ntBASIC0.9□□□□□ -2.27
SSX4O60224 RNU6-1223P-201ENST00000517124 104 ntBASIC0.9□□□□□ -2.27
SSX4O60224 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
SSX4O60224 AL365205.2-201ENST00000594586 68 ntBASIC0.9□□□□□ -2.27
SSX4O60224 AC009779.6-201ENST00000603972 165 ntBASIC0.9□□□□□ -2.27
SSX4O60224 AP000753.3-201ENST00000604083 169 ntBASIC0.9□□□□□ -2.27
SSX4O60224 AL020996.3-201ENST00000606617 222 ntBASIC0.9□□□□□ -2.27
SSX4O60224 MIR8055-201ENST00000610739 97 ntBASIC0.9□□□□□ -2.27
SSX4O60224 MIR6767-201ENST00000637302 66 ntBASIC0.9□□□□□ -2.27
SSX4O60224 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
SSX4O60224 RNU6-978P-201ENST00000364371 103 ntBASIC0.89□□□□□ -2.27
SSX4O60224 MIR613-201ENST00000385248 95 ntBASIC0.89□□□□□ -2.27
SSX4O60224 RNU6-205P-201ENST00000390858 107 ntBASIC0.89□□□□□ -2.27
SSX4O60224 snosnR66.1-201ENST00000391095 99 ntBASIC0.89□□□□□ -2.27
SSX4O60224 RNU6-994P-201ENST00000410507 111 ntBASIC0.89□□□□□ -2.27
SSX4O60224 HMGN1P33-201ENST00000432945 451 ntBASIC0.89□□□□□ -2.27
SSX4O60224 SNORD114-21-201ENST00000606412 72 ntBASIC0.89□□□□□ -2.27
SSX4O60224 AC022709.1-201ENST00000615967 87 ntBASIC0.89□□□□□ -2.27
SSX4O60224 U6.106-201ENST00000636360 105 ntBASIC0.89□□□□□ -2.27
SSX4O60224 MIR377-201ENST00000362145 69 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.188-201ENST00000363952 111 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6-275P-201ENST00000364910 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.351-201ENST00000365436 96 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6-1292P-201ENST00000383856 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6-47P-201ENST00000383866 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.401-201ENST00000383965 117 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.412-201ENST00000384001 104 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6-643P-201ENST00000384018 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 MIR548I3-201ENST00000408378 149 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.618-201ENST00000410949 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 AC244023.1-201ENST00000426884 112 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNA5SP255-201ENST00000516370 107 ntBASIC0.88□□□□□ -2.27
SSX4O60224 RNU6-1271P-201ENST00000517049 105 ntBASIC0.88□□□□□ -2.27
SSX4O60224 MIR4264-201ENST00000583520 66 ntBASIC0.88□□□□□ -2.27
SSX4O60224 MIR5197-201ENST00000583721 112 ntBASIC0.88□□□□□ -2.27
SSX4O60224 AC242498.1-201ENST00000604134 111 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Z97988.1-201ENST00000637697 135 ntBASIC0.88□□□□□ -2.27
SSX4O60224 Y_RNA.75-201ENST00000362927 97 ntBASIC0.87□□□□□ -2.27
SSX4O60224 SNORD38B-201ENST00000384690 67 ntBASIC0.87□□□□□ -2.27
SSX4O60224 SNORD89-201ENST00000390981 114 ntBASIC0.87□□□□□ -2.27
SSX4O60224 RNU6-1190P-201ENST00000410811 104 ntBASIC0.87□□□□□ -2.27
SSX4O60224 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.87□□□□□ -2.27
SSX4O60224 AC130289.1-201ENST00000577321 73 ntBASIC0.87□□□□□ -2.27
SSX4O60224 Z83818.1-201ENST00000603584 150 ntBASIC0.87□□□□□ -2.27
SSX4O60224 SNORD38B-202ENST00000625943 69 ntBASIC0.87□□□□□ -2.27
SSX4O60224 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
SSX4O60224 SNORA1.1-201ENST00000364671 133 ntBASIC0.86□□□□□ -2.27
SSX4O60224 RNU6-580P-201ENST00000365159 107 ntBASIC0.86□□□□□ -2.27
SSX4O60224 RPS3AP1-201ENST00000413190 320 ntBASIC0.86□□□□□ -2.27
SSX4O60224 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
SSX4O60224 SEPT7P4-201ENST00000437076 306 ntBASIC0.86□□□□□ -2.27
SSX4O60224 AC067940.1-201ENST00000458411 300 ntBASIC0.86□□□□□ -2.27
SSX4O60224 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
SSX4O60224 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
SSX4O60224 MIR302B-201ENST00000362188 73 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms