Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MIR5089-201ENST00000580047 84 ntBASIC2.25□□□□□ -2.05
DDX41Q9UJV9 MIR6845-201ENST00000613182 61 ntBASIC2.25□□□□□ -2.05
DDX41Q9UJV9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.25□□□□□ -2.05
DDX41Q9UJV9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
DDX41Q9UJV9 MIR342-201ENST00000362212 99 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNU6-309P-201ENST00000364573 106 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 AC019129.1-201ENST00000403786 261 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNA5SP489-201ENST00000410986 109 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNU7-67P-201ENST00000459003 62 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNA5SP236-201ENST00000516169 116 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNU7-53P-201ENST00000516705 60 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.24□□□□□ -2.05
DDX41Q9UJV9 AL357312.1-201ENST00000603879 298 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.24□□□□□ -2.05
DDX41Q9UJV9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
DDX41Q9UJV9 RNU6-647P-201ENST00000364243 107 ntBASIC2.23□□□□□ -2.05
DDX41Q9UJV9 SNORD113-1-201ENST00000365321 69 ntBASIC2.23□□□□□ -2.05
DDX41Q9UJV9 MIR520C-201ENST00000385005 87 ntBASIC2.23□□□□□ -2.05
DDX41Q9UJV9 SNX2P2-201ENST00000424553 323 ntBASIC2.23□□□□□ -2.05
DDX41Q9UJV9 AL035398.1-201ENST00000430869 322 ntBASIC2.23□□□□□ -2.05
DDX41Q9UJV9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.23□□□□□ -2.05
DDX41Q9UJV9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.23□□□□□ -2.05
DDX41Q9UJV9 Y_RNA.140-201ENST00000363474 103 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 RNU6-80P-201ENST00000384195 107 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 Y_RNA.537-201ENST00000384626 109 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 RPS29P29-201ENST00000456396 171 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 RNU6-998P-201ENST00000515894 101 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 SNRPGP19-201ENST00000603826 189 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 AC243994.1-201ENST00000618627 109 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 AL596211.1-201ENST00000569873 2277 ntBASIC2.22□□□□□ -2.05
DDX41Q9UJV9 RNU6-1065P-201ENST00000384513 106 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 AC008267.6-201ENST00000441664 139 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 AC079140.2-201ENST00000506193 142 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 RNU6-922P-201ENST00000516753 99 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
DDX41Q9UJV9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 AC091932.4-201ENST00000623386 200 ntBASIC2.21□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.114-201ENST00000363265 113 ntBASIC2.2□□□□□ -2.06
DDX41Q9UJV9 MIR583-201ENST00000384846 75 ntBASIC2.2□□□□□ -2.06
DDX41Q9UJV9 SNORD28B-201ENST00000390993 75 ntBASIC2.2□□□□□ -2.06
DDX41Q9UJV9 SNORA40.18-201ENST00000391200 128 ntBASIC2.2□□□□□ -2.06
DDX41Q9UJV9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.2□□□□□ -2.06
DDX41Q9UJV9 MIR4764-201ENST00000580680 88 ntBASIC2.2□□□□□ -2.06
DDX41Q9UJV9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.2□□□□□ -2.06
DDX41Q9UJV9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.2□□□□□ -2.06
DDX41Q9UJV9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.2□□□□□ -2.06
DDX41Q9UJV9 RNY1P6-201ENST00000384193 109 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 SNORA51.10-201ENST00000384418 136 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.494-201ENST00000384432 111 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 RNU6-1081P-201ENST00000384537 107 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 AL158147.1-201ENST00000443970 75 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 AC005908.1-201ENST00000468701 347 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 RN7SKP179-201ENST00000516126 217 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 RNU6-958P-201ENST00000516995 106 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 GHRLOS.1-201ENST00000610995 70 ntBASIC2.19□□□□□ -2.06
DDX41Q9UJV9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.71-201ENST00000362892 104 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 RNU6-690P-201ENST00000365242 106 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.338-201ENST00000365320 114 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 RNU2-11P-201ENST00000459191 187 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 AC008834.1-201ENST00000511612 175 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.18□□□□□ -2.06
DDX41Q9UJV9 MIR548AI-201ENST00000579940 88 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.18□□□□□ -2.06
DDX41Q9UJV9 AP000942.3-201ENST00000603702 160 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 MIR4791-201ENST00000607666 84 ntBASIC2.18□□□□□ -2.06
DDX41Q9UJV9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
DDX41Q9UJV9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
DDX41Q9UJV9 RNU1-17P-201ENST00000363022 152 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.294-201ENST00000364916 102 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 SNORD1A-201ENST00000364968 72 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 RNU6-22P-201ENST00000384355 107 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 RNA5SP261-201ENST00000410536 106 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 AL445685.2-201ENST00000422551 342 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 Y_RNA.651-201ENST00000459380 103 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 RNU2-13P-201ENST00000515909 113 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 AC008133.2-201ENST00000624540 351 ntBASIC2.17□□□□□ -2.06
DDX41Q9UJV9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
DDX41Q9UJV9 SNORA24-201ENST00000384096 131 ntBASIC2.16□□□□□ -2.06
DDX41Q9UJV9 MIR570-201ENST00000384917 97 ntBASIC2.16□□□□□ -2.06
DDX41Q9UJV9 RPL39P39-201ENST00000455840 151 ntBASIC2.16□□□□□ -2.06
DDX41Q9UJV9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.16□□□□□ -2.06
DDX41Q9UJV9 MIR3937-201ENST00000580135 106 ntBASIC2.16□□□□□ -2.06
DDX41Q9UJV9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.16□□□□□ -2.06
DDX41Q9UJV9 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
DDX41Q9UJV9 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
DDX41Q9UJV9 RNU6-235P-201ENST00000362644 107 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 SNORD116-14-201ENST00000383894 92 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 SNORD116-17-201ENST00000383929 92 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 SNORD116-15-201ENST00000384445 92 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 SNORD116-19-201ENST00000384729 92 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 RNU7-73P-201ENST00000458743 63 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 snoU13.16-201ENST00000459350 104 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 RNU6-313P-201ENST00000516317 112 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 SNORD111.1-201ENST00000516421 86 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 AC133485.4-201ENST00000561835 220 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 AC138907.4-201ENST00000570107 226 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 MIR3152-201ENST00000579801 74 ntBASIC2.15□□□□□ -2.07
DDX41Q9UJV9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 214.9 ms