Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SNORD61-201ENST00000384252 73 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 MIR518F-201ENST00000384973 87 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 RNU1-119P-201ENST00000391122 165 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 SNORA18.4-201ENST00000516440 124 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 RNU6-365P-201ENST00000517113 106 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 AP003484.1-201ENST00000530974 250 ntBASIC0.59□□□□□ -2.31
LHX3Q9UBR4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.44-201ENST00000362676 108 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.237-201ENST00000364439 102 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 RNU6-740P-201ENST00000364734 105 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 RNU6-580P-201ENST00000365159 107 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 SNORA24-201ENST00000384096 131 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 MIR548A2-201ENST00000384956 97 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 MT-TT-201ENST00000387460 66 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 RNU6-1109P-201ENST00000391187 107 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 RNU6-651P-201ENST00000411040 105 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 SNORD83.1-201ENST00000411362 77 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 AC087499.4-201ENST00000448505 178 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.58□□□□□ -2.32
LHX3Q9UBR4 TRBVB-201ENST00000477100 408 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 RNA5SP436-201ENST00000516020 115 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 SNORD36C-201ENST00000516733 66 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 AP000942.4-201ENST00000604811 241 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 AP001282.2-201ENST00000616149 309 ntBASIC0.58□□□□□ -2.32
LHX3Q9UBR4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.57□□□□□ -2.32
LHX3Q9UBR4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.57□□□□□ -2.32
LHX3Q9UBR4 RNU6-934P-201ENST00000365154 107 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 RNU6-1227P-201ENST00000383981 107 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 RNU6-713P-201ENST00000384761 107 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 MIR7-2-201ENST00000384970 110 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 MIR626-201ENST00000385032 94 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 RNU6-913P-201ENST00000390913 95 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 SNORA40.5-201ENST00000391061 128 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 AC244098.3-201ENST00000424803 96 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 AC244023.1-201ENST00000426884 112 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 MTATP8P1-201ENST00000467115 207 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 MIR5688-201ENST00000580619 83 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 MIR4264-201ENST00000583520 66 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 AC242498.1-201ENST00000604134 111 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.57□□□□□ -2.32
LHX3Q9UBR4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
LHX3Q9UBR4 RNU6-369P-201ENST00000362515 102 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 RNU6-238P-201ENST00000363313 106 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 SNORA27-201ENST00000384323 126 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 RNA5SP222-201ENST00000411039 105 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.622-201ENST00000411091 108 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 HMGN1P33-201ENST00000432945 451 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 AL138752.1-201ENST00000452964 351 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 RNU6-635P-201ENST00000516651 102 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 AC004817.2-201ENST00000561794 651 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 PVT1_3.1-201ENST00000620853 95 ntBASIC0.56□□□□□ -2.32
LHX3Q9UBR4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.55□□□□□ -2.32
LHX3Q9UBR4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.55□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.91-201ENST00000363042 107 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 SNORD24-201ENST00000383884 75 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.393-201ENST00000383936 102 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 MIR216A-201ENST00000385063 110 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU2-70P-201ENST00000410718 179 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU7-62P-201ENST00000458856 62 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU6-1299P-201ENST00000516316 100 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU6-977P-201ENST00000516411 103 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU6-504P-201ENST00000516568 104 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 RNU6-126P-201ENST00000516685 103 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 MIR4771-2-201ENST00000577758 74 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 MIR4771-1-201ENST00000582617 74 ntBASIC0.55□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.66-201ENST00000362862 102 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RNU6-888P-201ENST00000363010 101 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 SNORA36.2-201ENST00000384004 127 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 MIR520F-201ENST00000384824 87 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 AF228730.3-201ENST00000436691 102 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RNU7-73P-201ENST00000458743 63 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RNU6-1132P-201ENST00000459214 107 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RPS29P24-201ENST00000486345 171 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RNU6-453P-201ENST00000516819 85 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 AP003072.1-201ENST00000531740 145 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 RN7SL793P-201ENST00000583259 296 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 uc_338.6-201ENST00000613544 171 ntBASIC0.54□□□□□ -2.32
LHX3Q9UBR4 MIR342-201ENST00000362212 99 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.7-201ENST00000362352 102 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 snoU2_19.4-201ENST00000364329 80 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.634-201ENST00000364811 113 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNU6-484P-201ENST00000384016 107 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 SNORD38B-201ENST00000384690 67 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 MIR520H-201ENST00000385126 88 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNU6-733P-201ENST00000410759 104 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 AC098934.3-201ENST00000430450 190 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 AC092628.1-201ENST00000436250 252 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 SNRPGP8-201ENST00000454064 226 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNU4-54P-201ENST00000516428 129 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNA5SP121-201ENST00000516537 101 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 RNU7-53P-201ENST00000516705 60 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 AC018659.1-201ENST00000551083 169 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 MIR8055-201ENST00000610739 97 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 MIR6513-201ENST00000621188 64 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 SNORD38B-202ENST00000625943 69 ntBASIC0.53□□□□□ -2.32
LHX3Q9UBR4 Y_RNA.11-201ENST00000362375 109 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms