Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-1050P-201ENST00000410388 107 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 AC244250.2-201ENST00000418731 148 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 MTND3P12-201ENST00000559068 328 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 AL670379.3-201ENST00000605040 251 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 AC063944.3-201ENST00000609969 533 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 MTND5P32-201ENST00000560711 1802 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.37-201ENST00000362606 108 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 RNU6-626P-201ENST00000363354 107 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.359-201ENST00000365498 102 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.553-201ENST00000384670 102 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 AC109327.2-201ENST00000448339 378 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 RNU6-126P-201ENST00000516685 103 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 RNU6-307P-201ENST00000516743 106 ntBASIC-0.58□□□□□ -2.5
SCN3AQ9NY46 SNORD114-14-201ENST00000362723 75 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.339-201ENST00000365325 102 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 RNU6-20P-201ENST00000384106 107 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 SNORD77.3-201ENST00000391113 65 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 RNA5SP237-201ENST00000410414 113 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 CEP57L1P1-201ENST00000430943 1201 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 AC138749.4-201ENST00000563970 127 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 AL133255.1-201ENST00000606374 441 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 RN7SL660P-201ENST00000614852 299 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.547-201ENST00000384654 119 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 MTND1P2-201ENST00000430604 821 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 AC010655.3-201ENST00000478818 450 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 MIR5701-3-201ENST00000578890 82 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 MIR5701-1-201ENST00000585138 82 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 MIR5701-2-201ENST00000615634 82 ntBASIC-0.59□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.48-201ENST00000362710 103 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.383-201ENST00000383855 97 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU6-483P-201ENST00000384088 108 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.453-201ENST00000384223 109 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU6-913P-201ENST00000390913 95 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.594-201ENST00000410373 140 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU6-284P-201ENST00000411105 106 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU7-96P-201ENST00000459535 64 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 AC114755.3-201ENST00000481111 251 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 DLEU2_2.2-201ENST00000615474 90 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU6-306P-201ENST00000384617 107 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 AC074085.1-201ENST00000413598 418 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 MTND3P10-201ENST00000450967 341 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RNU6-956P-201ENST00000458868 103 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 RPL7P42-201ENST00000481005 679 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 OSBPL9P5-201ENST00000542581 171 ntBASIC-0.6□□□□□ -2.51
SCN3AQ9NY46 MIR342-201ENST00000362212 99 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 SNORD110-201ENST00000408189 75 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 AC109635.3-201ENST00000529536 185 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 AL021707.8-201ENST00000609428 183 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 AC073114.1-201ENST00000612027 490 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 AL442067.1-201ENST00000613261 223 ntBASIC-0.61□□□□□ -2.51
SCN3AQ9NY46 MIR302B-201ENST00000362188 73 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.230-201ENST00000364348 109 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU6-597P-201ENST00000365620 102 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU2-14P-201ENST00000411053 191 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU6-938P-201ENST00000411285 103 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 MTND1P34-201ENST00000438556 671 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 AC010424.1-201ENST00000506336 297 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU6-1314P-201ENST00000517139 104 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 AC013791.1-201ENST00000616619 62 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 AC084368.1-201ENST00000620935 65 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 MIR6514-201ENST00000622549 70 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNU6-144P-201ENST00000383951 107 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RNA5SP261-201ENST00000410536 106 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 AL160004.2-201ENST00000432935 350 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 RPS3AP52-201ENST00000435639 297 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 DEFB131E-201ENST00000532329 154 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 AC055872.1-201ENST00000570978 278 ntBASIC-0.62□□□□□ -2.51
SCN3AQ9NY46 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 RNU6-1188P-201ENST00000363795 107 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 RNU6-1138P-201ENST00000365359 106 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 U8.15-201ENST00000390947 134 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 DEFB108C-201ENST00000400154 252 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 SUMO1P3-201ENST00000439961 304 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 AC144568.1-201ENST00000520139 137 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 MIR3145-201ENST00000580727 82 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 TPTEP1-208ENST00000636884 213 ntBASIC-0.63□□□□□ -2.51
SCN3AQ9NY46 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 RNU6-908P-201ENST00000410160 94 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 MIR1468-201ENST00000410600 86 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 BX276092.1-201ENST00000427368 251 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 RN7SKP295-201ENST00000517264 153 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 MIR5692C2-201ENST00000577959 77 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 U7.6-201ENST00000610841 64 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 Z99129.1-201ENST00000612510 255 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 AC015540.1-201ENST00000615828 501 ntBASIC-0.64□□□□□ -2.51
SCN3AQ9NY46 RNU6-653P-201ENST00000363074 106 ntBASIC-0.64□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 192.9 ms