Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
CCDC87Q9NVE4 Y_RNA.370-201ENST00000365589 108 ntBASIC2.67□□□□□ -1.98
CCDC87Q9NVE4 RNU1-138P-201ENST00000384093 164 ntBASIC2.67□□□□□ -1.98
CCDC87Q9NVE4 MIR516B2-201ENST00000385190 85 ntBASIC2.67□□□□□ -1.98
CCDC87Q9NVE4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.67□□□□□ -1.98
CCDC87Q9NVE4 AC093850.1-201ENST00000454121 251 ntBASIC2.67□□□□□ -1.98
CCDC87Q9NVE4 MIR342-201ENST00000362212 99 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 RNU6-1123P-201ENST00000362347 106 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 SNORD23.1-201ENST00000408212 104 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 SNX2P2-201ENST00000424553 323 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 RNU6-893P-201ENST00000458841 100 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 SNORA31.11-201ENST00000516528 139 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 MIR4446-201ENST00000578505 67 ntBASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
CCDC87Q9NVE4 AC131280.1-202ENST00000624067 4211 ntBASIC2.65□□□□□ -1.98
CCDC87Q9NVE4 SNORA67.1-201ENST00000364749 141 ntBASIC2.65□□□□□ -1.99
CCDC87Q9NVE4 RNU7-53P-201ENST00000516705 60 ntBASIC2.65□□□□□ -1.99
CCDC87Q9NVE4 SUMO2P16-201ENST00000519475 264 ntBASIC2.65□□□□□ -1.99
CCDC87Q9NVE4 snoU13.31-201ENST00000607291 104 ntBASIC2.65□□□□□ -1.99
CCDC87Q9NVE4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP182-201ENST00000516064 82 ntBASIC2.64□□□□□ -1.99
CCDC87Q9NVE4 SNORA31.17-201ENST00000516953 127 ntBASIC2.64□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.64□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.49-201ENST00000362714 112 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.85-201ENST00000363014 111 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP393-201ENST00000363423 117 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.494-201ENST00000384432 111 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 SNORD12C-201ENST00000386307 89 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP212-201ENST00000391223 107 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP261-201ENST00000410536 106 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 RNU2-11P-201ENST00000459191 187 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 SNORD123-201ENST00000459473 70 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 AC055731.1-201ENST00000474387 401 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 MIR3152-201ENST00000579801 74 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 AC021613.1-201ENST00000623880 111 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 AC008555.8-201ENST00000623602 2168 ntBASIC2.63□□□□□ -1.99
CCDC87Q9NVE4 AL589743.1-201ENST00000551932 2712 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 RNU6-147P-201ENST00000383983 107 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 AL022718.1-201ENST00000412004 84 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 RPS29P29-201ENST00000456396 171 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 RNU2-13P-201ENST00000515909 113 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 RNU7-123P-201ENST00000515911 60 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 MIR3613-201ENST00000579844 87 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 AL137847.3-201ENST00000611521 109 ntBASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC87Q9NVE4 RNU6-1107P-201ENST00000364817 104 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 SNORA24-201ENST00000384096 131 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 MIR526A1-201ENST00000384897 85 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 AL031737.1-201ENST00000450125 223 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 RNU7-67P-201ENST00000459003 62 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP57-201ENST00000459463 123 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 MIR3163-201ENST00000581592 73 ntBASIC2.61□□□□□ -1.99
CCDC87Q9NVE4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNU6-414P-201ENST00000363705 104 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.537-201ENST00000384626 109 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNU6-1319P-201ENST00000390855 104 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNU6-747P-201ENST00000390928 104 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNU6-241P-201ENST00000391148 104 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 SNORA17.3-201ENST00000391159 129 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 SNORA40.18-201ENST00000391200 128 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNA5SP144-201ENST00000410846 116 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 RNU6-177P-201ENST00000411257 104 ntBASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
CCDC87Q9NVE4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 MIR337-201ENST00000362281 93 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.116-201ENST00000363292 103 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 Y_RNA.118-201ENST00000363300 101 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 RNU2-35P-201ENST00000516446 142 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 SNORA74.3-201ENST00000517108 154 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 MIR548AR-201ENST00000582191 57 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 FAM106DP-201ENST00000586416 501 ntBASIC2.59□□□□□ -1.99
CCDC87Q9NVE4 AC005336.3-201ENST00000623833 2679 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 MIR378A-201ENST00000362177 66 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 RNU4-16P-201ENST00000364737 141 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 RNU7-73P-201ENST00000458743 63 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 RNU6-958P-201ENST00000516995 106 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 HSPE1P19-201ENST00000603327 295 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 RNU6-94P-201ENST00000607728 107 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 AC243994.1-201ENST00000618627 109 ntBASIC2.58□□□□□ -2
CCDC87Q9NVE4 WWP1P1-201ENST00000466609 2769 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 Y_RNA.309-201ENST00000365046 111 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 Y_RNA.362-201ENST00000365518 110 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 RNU6-321P-201ENST00000410912 106 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 AC011753.1-201ENST00000451001 220 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 RPL39P34-201ENST00000477141 156 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 RNU7-43P-201ENST00000516554 64 ntBASIC2.57□□□□□ -2
CCDC87Q9NVE4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.57□□□□□ -2
CCDC87Q9NVE4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.57□□□□□ -2
CCDC87Q9NVE4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.57□□□□□ -2
CCDC87Q9NVE4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC87Q9NVE4 RNU6-457P-201ENST00000363999 107 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms