Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RNU6-860P-201ENST00000410860 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-1217P-201ENST00000411276 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-785P-201ENST00000411324 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 MIR18B-201ENST00000454574 71 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 snoU13.2-201ENST00000459201 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 RPS29P24-201ENST00000486345 171 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 AC090897.1-201ENST00000580909 226 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 SNORA25.18-201ENST00000607153 114 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 AL008718.3-201ENST00000610217 321 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 U6.90-201ENST00000614007 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 U6.70-201ENST00000620287 104 ntBASIC0.19□□□□□ -2.38
EXOSC4Q9NPD3 Y_RNA.26-201ENST00000362539 101 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 MIR216A-201ENST00000385063 110 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 MIR518A1-201ENST00000385068 85 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 MIR1287-201ENST00000408492 90 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 SNORD100-201ENST00000408573 76 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 RNA5SP193-201ENST00000410353 107 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 RPL21P38-201ENST00000418090 167 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 ELOCP20-201ENST00000422460 345 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 AF228730.3-201ENST00000436691 102 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 SNRPGP12-201ENST00000449481 213 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 RNA5SP94-201ENST00000516917 108 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 RNU2-31P-201ENST00000516954 155 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 AL589743.1-201ENST00000551932 2712 ntBASIC0.18□□□□□ -2.38
EXOSC4Q9NPD3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 Y_RNA.16-201ENST00000362421 102 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 Y_RNA.226-201ENST00000364337 114 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 SNORA63C-201ENST00000364578 129 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-290P-201ENST00000365212 101 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU4-45P-201ENST00000365469 141 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 SNORD42.2-201ENST00000365570 69 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 SNORA63.7-201ENST00000365579 123 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-42P-201ENST00000384165 107 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 MIR1257-201ENST00000408490 117 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 MIR1252-201ENST00000408861 65 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-101P-201ENST00000410323 104 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU2-11P-201ENST00000459191 187 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU7-45P-201ENST00000459460 63 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNY3P15-201ENST00000516297 97 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU7-53P-201ENST00000516705 60 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-365P-201ENST00000517113 106 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 MIR3678-201ENST00000578455 94 ntBASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.17□□□□□ -2.38
EXOSC4Q9NPD3 AC090625.1-201ENST00000357130 210 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 SNORA25.1-201ENST00000362326 128 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 Y_RNA.214-201ENST00000364201 112 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 RNU6-474P-201ENST00000384243 107 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 SNORA40.8-201ENST00000411034 126 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 AC022523.2-201ENST00000561045 150 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 MIR4662B-201ENST00000579498 81 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 SNORD92-201ENST00000585078 85 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 AC006006.1-201ENST00000603082 144 ntBASIC0.16□□□□□ -2.38
EXOSC4Q9NPD3 MIR30D-201ENST00000362283 70 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.19-201ENST00000362462 99 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-888P-201ENST00000363010 101 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.91-201ENST00000363042 107 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-770P-201ENST00000363929 105 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.217-201ENST00000364214 105 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 RNA5SP117-201ENST00000365294 118 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 SNORD24-201ENST00000383884 75 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-514P-201ENST00000384208 107 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 MT-TT-201ENST00000387460 66 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.641-201ENST00000459414 105 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 SNORA27.4-201ENST00000516650 95 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 SNORA40.15-201ENST00000516884 107 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.802-201ENST00000614892 130 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 AC022709.1-201ENST00000615967 87 ntBASIC0.15□□□□□ -2.39
EXOSC4Q9NPD3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.28-201ENST00000362554 111 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.116-201ENST00000363292 103 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNA5SP62-201ENST00000363457 110 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.229-201ENST00000364347 113 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-326P-201ENST00000365480 107 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-597P-201ENST00000365620 102 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MIR563-201ENST00000385080 79 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MIR526A2-201ENST00000390198 65 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 SNORD77.3-201ENST00000391113 65 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 SNORA53-201ENST00000391141 249 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MIR548I3-201ENST00000408378 149 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.617-201ENST00000410920 90 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 SNORD71-201ENST00000411292 86 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-998P-201ENST00000515894 101 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-504P-201ENST00000516568 104 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 SCARNA24.2-201ENST00000516968 130 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 RNU6-448P-201ENST00000517052 107 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 AC133485.4-201ENST00000561835 220 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MIR4431-201ENST00000579990 94 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MIR4801-201ENST00000582704 82 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 AP001282.2-201ENST00000616149 309 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 MTND4P29-201ENST00000503122 1372 ntBASIC0.14□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.64-201ENST00000362845 102 ntBASIC0.13□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.66-201ENST00000362862 102 ntBASIC0.13□□□□□ -2.39
EXOSC4Q9NPD3 SNORD118-201ENST00000363593 134 ntBASIC0.13□□□□□ -2.39
EXOSC4Q9NPD3 Y_RNA.238-201ENST00000364441 102 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms