Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MIR499B-201ENST00000636498 73 ntBASIC-0.24□□□□□ -2.45
VCX3AQ9NNX9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 MIR367-201ENST00000362299 68 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.6-201ENST00000362350 114 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 RNU6-653P-201ENST00000363074 106 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.160-201ENST00000363677 92 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 RNU6-597P-201ENST00000365620 102 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 U8.15-201ENST00000390947 134 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 RNU7-159P-201ENST00000459284 62 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 MIR3152-201ENST00000579801 74 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 MIR6717-201ENST00000622747 73 ntBASIC-0.25□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.222-201ENST00000364264 102 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.496-201ENST00000384444 101 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 SNORA72.6-201ENST00000384520 129 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 SNORD116-4-201ENST00000384733 96 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 MIR215-201ENST00000384858 110 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AC096949.1-201ENST00000412047 152 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 U8.20-201ENST00000459445 131 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 RNU7-45P-201ENST00000459460 63 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.655-201ENST00000515919 96 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 RNU6-764P-201ENST00000516396 105 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 SNORD116.3-201ENST00000517176 78 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AC100767.1-201ENST00000528178 123 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 MIR5190-201ENST00000581537 80 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 RPS29P30-201ENST00000600975 111 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AC013791.1-201ENST00000616619 62 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AL138825.1-201ENST00000618587 192 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 AC244669.1-204ENST00000621564 178 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 IST1-227ENST00000626438 126 ntTSL 5 BASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 MIR1295B-201ENST00000636144 60 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.26□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.259-201ENST00000364619 101 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.318-201ENST00000365131 97 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 SNORD116-29-201ENST00000384516 83 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 RNU6-535P-201ENST00000384722 107 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 RNU6-269P-201ENST00000391077 97 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 RNY4P36-201ENST00000391116 96 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 AF228730.3-201ENST00000436691 102 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MTATP6P26-201ENST00000445926 662 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.638-201ENST00000459374 113 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 snoU13.18-201ENST00000459483 104 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 SEPT14P8-201ENST00000508026 178 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 RNU6-365P-201ENST00000517113 106 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MTND5P34-201ENST00000568888 325 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MIR4724-201ENST00000579485 89 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MIR4491-201ENST00000581087 68 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 C8orf59P2-201ENST00000603441 271 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MIR6515-201ENST00000619843 57 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 MTND4LP32-201ENST00000636111 270 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 AC073869.6-201ENST00000640656 341 ntBASIC-0.27□□□□□ -2.45
VCX3AQ9NNX9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 RNU6-161P-201ENST00000363051 106 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 RNU6-130P-201ENST00000411112 103 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 AC104692.1-201ENST00000472406 90 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 MRPS35P2-201ENST00000508242 191 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 MTCO2P24-201ENST00000515611 426 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 RNU6-397P-201ENST00000516226 104 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 SNORA40.14-201ENST00000516543 86 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 RNU6-126P-201ENST00000516685 103 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 AP003733.2-201ENST00000529409 171 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 AC141846.1-201ENST00000568348 142 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 PART1_1.1-201ENST00000611761 217 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 AC025253.1-201ENST00000613623 543 ntBASIC-0.28□□□□□ -2.45
VCX3AQ9NNX9 MIR342-201ENST00000362212 99 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 RNY1P14-201ENST00000384426 108 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 MIR501-201ENST00000390204 84 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 RNA5SP63-201ENST00000391225 112 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 RNA5SP261-201ENST00000410536 106 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 RNU7-165P-201ENST00000458864 60 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AC138869.1-201ENST00000568623 124 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AC092447.9-201ENST00000603395 144 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AL133255.1-201ENST00000606374 441 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 SNORD58B-201ENST00000607313 66 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AC092794.1-201ENST00000612734 582 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 AC104985.2-201ENST00000620598 500 ntBASIC-0.29□□□□□ -2.46
VCX3AQ9NNX9 MIR302B-201ENST00000362188 73 ntBASIC-0.3□□□□□ -2.46
VCX3AQ9NNX9 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.3□□□□□ -2.46
VCX3AQ9NNX9 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.3□□□□□ -2.46
VCX3AQ9NNX9 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.3□□□□□ -2.46
VCX3AQ9NNX9 RNU6-102P-201ENST00000384485 104 ntBASIC-0.3□□□□□ -2.46
VCX3AQ9NNX9 FGF7P6-202ENST00000451282 293 ntBASIC-0.3□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms