Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC015726.2-201ENST00000620112 122 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 AL121890.5-201ENST00000620848 304 ntBASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
UPF3AQ9H1J1 RNU6-312P-201ENST00000364629 107 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU6-1336P-201ENST00000383886 109 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU6-886P-201ENST00000384319 105 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU6-342P-201ENST00000384521 104 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 MIR598-201ENST00000384868 97 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 MIR136-201ENST00000385207 82 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 MIR802-201ENST00000390235 94 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU2-70P-201ENST00000410718 179 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 AF228730.3-201ENST00000436691 102 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 SNORD123-201ENST00000459473 70 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU6-693P-201ENST00000516134 107 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU6-365P-201ENST00000517113 106 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 RNU7-181P-201ENST00000517234 74 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 MIR4431-201ENST00000579990 94 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 MIR3668-201ENST00000582138 75 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 AL513534.2-201ENST00000603836 250 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 SNORD114-21-201ENST00000606412 72 ntBASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
UPF3AQ9H1J1 Y_RNA.441-201ENST00000384123 112 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 RNU6-1135P-201ENST00000411083 103 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 SNORA18.7-201ENST00000516910 131 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 RNU6-182P-201ENST00000516970 105 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 SNORA74.3-201ENST00000517108 154 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 RNU6-902P-201ENST00000517212 91 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 AL512310.8-201ENST00000550183 120 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 MIR3664-201ENST00000579074 99 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 MIR548AR-201ENST00000582191 57 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 AC211469.2-201ENST00000605461 205 ntBASIC1.15□□□□□ -2.23
UPF3AQ9H1J1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 RNY1P11-201ENST00000363759 113 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 RNU4-84P-201ENST00000364200 139 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 RNU6-818P-201ENST00000364837 108 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 SNORD38C-201ENST00000384381 69 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 SNORD77.3-201ENST00000391113 65 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 MIR548I3-201ENST00000408378 149 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 MIR548I1-201ENST00000408810 149 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 AC006461.1-201ENST00000412637 326 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 RNU6-504P-201ENST00000516568 104 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 RNU7-121P-201ENST00000516604 62 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 SNORD36C-201ENST00000516733 66 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 MIR378D2-201ENST00000580636 98 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 MIR3192-201ENST00000584920 77 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 AC098479.1-201ENST00000609225 154 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 AL096861.1-201ENST00000610899 123 ntBASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.37-201ENST00000362606 108 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 SNORD115-28-201ENST00000363931 81 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 RNU4-38P-201ENST00000364472 129 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 RNU6-768P-201ENST00000384683 107 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 MIR570-201ENST00000384917 97 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 MIR532-201ENST00000385025 91 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 U8.17-201ENST00000391292 132 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 SNX2P2-201ENST00000424553 323 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 RPS29P28-201ENST00000446439 141 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 RNU7-41P-201ENST00000515917 61 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.662-201ENST00000516028 97 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 MIR3937-201ENST00000580135 106 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 GHRLOS.1-201ENST00000610995 70 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 MIR3658-201ENST00000636291 56 ntBASIC1.13□□□□□ -2.23
UPF3AQ9H1J1 RNU6-1082P-201ENST00000364574 107 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.555-201ENST00000384673 110 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 AL451046.2-201ENST00000403074 277 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 RNU6-394P-201ENST00000410735 107 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 RNU2-13P-201ENST00000515909 113 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 RNU6-126P-201ENST00000516685 103 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 MIR5000-201ENST00000577717 103 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 MIR3129-201ENST00000581095 76 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 AL365205.2-201ENST00000594586 68 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 MIR6857-201ENST00000613267 93 ntBASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.242-201ENST00000364473 110 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 RNU6-1130P-201ENST00000365434 107 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 MIR618-201ENST00000385287 98 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 SNORA26-201ENST00000391286 122 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 MRPL35P3-201ENST00000421557 364 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 SNORA31.4-201ENST00000516049 129 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 RNU7-40P-201ENST00000516397 64 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 CYP3A52P-201ENST00000563326 91 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 MIR3973-201ENST00000579824 107 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 MIR4764-201ENST00000580680 88 ntBASIC1.11□□□□□ -2.23
UPF3AQ9H1J1 SNORD33-201ENST00000362761 85 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.180-201ENST00000363867 113 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.270-201ENST00000364693 104 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 Y_RNA.272-201ENST00000364696 102 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 RNU6-804P-201ENST00000384286 107 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 RNU6-239P-201ENST00000390990 99 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 SNORA79-201ENST00000408376 140 ntBASIC1.1□□□□□ -2.23
UPF3AQ9H1J1 RPS26P48-201ENST00000491713 339 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms