Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 SNORD14E-201ENST00000364009 85 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.200-201ENST00000364018 102 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-442P-201ENST00000383968 104 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.435-201ENST00000384095 112 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.494-201ENST00000384432 111 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.547-201ENST00000384654 119 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 RNU7-21P-201ENST00000459430 62 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 RNU7-41P-201ENST00000515917 61 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-138P-201ENST00000515952 107 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 SNORA74.3-201ENST00000517108 154 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 AC022559.1-201ENST00000520905 205 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 AP003716.2-201ENST00000528260 108 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 RNU2-4P-201ENST00000606190 192 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 AC108706.1-201ENST00000611053 297 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 Pinc.1-201ENST00000616452 154 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 AC141273.2-201ENST00000618989 130 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 MIR6515-201ENST00000619843 57 ntBASIC0.8□□□□□ -2.28
ZNF540Q8NDQ6 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.23-201ENST00000362496 106 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.199-201ENST00000364014 102 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.634-201ENST00000364811 113 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.412-201ENST00000384001 104 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNY3P5-201ENST00000384127 102 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 SNORD61-201ENST00000384252 73 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.489-201ENST00000384410 101 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.571-201ENST00000384753 98 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-1228P-201ENST00000391014 107 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 MIR1302-7-201ENST00000408841 72 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNU4-43P-201ENST00000410628 137 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.622-201ENST00000411091 108 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 AC006461.1-201ENST00000412637 326 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 SNORD123-201ENST00000459473 70 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNU2-13P-201ENST00000515909 113 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-1007P-201ENST00000516586 107 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 AC109810.1-201ENST00000534066 224 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 MIR548AR-201ENST00000582191 57 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 AC022709.1-201ENST00000615967 87 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 MIR6767-201ENST00000637302 66 ntBASIC0.79□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.83-201ENST00000363005 113 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-888P-201ENST00000363010 101 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 MIR136-201ENST00000385207 82 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 MIR100-201ENST00000385259 80 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 MIR548O-201ENST00000408583 114 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 RPS26P48-201ENST00000491713 339 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-1219P-201ENST00000516143 112 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 SNORD111.1-201ENST00000516421 86 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 SNORA18.7-201ENST00000516910 131 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 RNU7-181P-201ENST00000517234 74 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 AP000942.4-201ENST00000604811 241 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 U6.106-201ENST00000636360 105 ntBASIC0.78□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.7-201ENST00000362352 102 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.121-201ENST00000363309 113 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-978P-201ENST00000364371 103 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-200P-201ENST00000364743 107 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.297-201ENST00000364950 91 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 SNORD24-201ENST00000383884 75 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 SNORA1-201ENST00000384107 130 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-578P-201ENST00000390980 103 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNU2-55P-201ENST00000411146 174 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNU5E-9P-201ENST00000411164 104 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 RNA5SP153-201ENST00000516498 76 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.714-201ENST00000517065 90 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 MIR4764-201ENST00000580680 88 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 MIR4744-201ENST00000581563 82 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 AC015726.2-201ENST00000620112 122 ntBASIC0.77□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.75-201ENST00000362927 97 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-103P-201ENST00000363686 107 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-682P-201ENST00000363843 106 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.257-201ENST00000364596 102 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-275P-201ENST00000364910 107 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.432-201ENST00000384087 111 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.476-201ENST00000384347 108 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 MIR570-201ENST00000384917 97 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 U8.17-201ENST00000391292 132 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 AF228730.3-201ENST00000436691 102 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-351P-201ENST00000516097 100 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 SNORD36C-201ENST00000516733 66 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-1270P-201ENST00000517128 108 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 MIR4662B-201ENST00000579498 81 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 PRELID3BP2-201ENST00000605362 201 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 AC104465.1-201ENST00000611365 139 ntBASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.76□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.354-201ENST00000365448 111 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 SNORA24-201ENST00000384096 131 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.466-201ENST00000384294 113 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 SNORD38C-201ENST00000384381 69 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 MIR15B-201ENST00000385045 98 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 SNORD77.3-201ENST00000391113 65 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 MIR1185-1-201ENST00000408598 86 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms