Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 Y_RNA.363-201ENST00000365529 113 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 RNU6-42P-201ENST00000384165 107 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 MIR618-201ENST00000385287 98 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 RNU6-918P-201ENST00000391219 106 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.18□□□□□ -2.22
USP41Q3LFD5 AP003484.1-201ENST00000530974 250 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 AC097639.2-201ENST00000603159 172 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 AC243994.1-201ENST00000618627 109 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 AC134878.1-201ENST00000619901 243 ntBASIC1.18□□□□□ -2.22
USP41Q3LFD5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
USP41Q3LFD5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP41Q3LFD5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
USP41Q3LFD5 Y_RNA.274-201ENST00000364714 101 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 Y_RNA.297-201ENST00000364950 91 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 Y_RNA.494-201ENST00000384432 111 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 Y_RNA.537-201ENST00000384626 109 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 MIR489-201ENST00000384923 84 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 RNU6-938P-201ENST00000411285 103 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.17□□□□□ -2.22
USP41Q3LFD5 AF228730.3-201ENST00000436691 102 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 RPS26P48-201ENST00000491713 339 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 RNU7-40P-201ENST00000516397 64 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 SNORD36C-201ENST00000516733 66 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 Z83818.1-201ENST00000603584 150 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 PRELID3BP2-201ENST00000605362 201 ntBASIC1.17□□□□□ -2.22
USP41Q3LFD5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.17□□□□□ -2.22
USP41Q3LFD5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
USP41Q3LFD5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.16□□□□□ -2.22
USP41Q3LFD5 Y_RNA.412-201ENST00000384001 104 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 SNORA1-201ENST00000384107 130 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 MIR520E-201ENST00000384867 87 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
USP41Q3LFD5 MIR1285-1-201ENST00000408593 84 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 RNU4-43P-201ENST00000410628 137 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 AL591704.2-201ENST00000421658 181 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 RNU7-67P-201ENST00000459003 62 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 SNORA18.4-201ENST00000516440 124 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 U6.106-201ENST00000636360 105 ntBASIC1.16□□□□□ -2.22
USP41Q3LFD5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-34-201ENST00000362441 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-12-201ENST00000362583 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-29-201ENST00000362834 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-9-201ENST00000362912 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-21-201ENST00000362963 81 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-14-201ENST00000363090 81 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-13-201ENST00000363358 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-41-201ENST00000363608 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-11-201ENST00000363616 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-5-201ENST00000363633 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-39-201ENST00000363694 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-4-201ENST00000363810 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-16-201ENST00000363887 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-6-201ENST00000363942 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-42-201ENST00000364273 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-15-201ENST00000364809 81 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 RNU6-275P-201ENST00000364910 107 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-1-201ENST00000364961 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-26-201ENST00000365067 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-10-201ENST00000365073 81 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 Y_RNA.330-201ENST00000365230 109 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-43-201ENST00000365503 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-36-201ENST00000365629 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORA80D-201ENST00000384488 135 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORA40.5-201ENST00000391061 128 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORA75.2-201ENST00000391138 150 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORA75.3-201ENST00000391231 150 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 MRPL35P3-201ENST00000421557 364 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 RPS23P4-201ENST00000487908 423 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD79.1-201ENST00000516069 84 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 MIR3129-201ENST00000581095 76 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 SNORD115-40-201ENST00000606510 82 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 RMST_2.1-201ENST00000617263 136 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 MIR6734-201ENST00000621166 68 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 MTND1P7-201ENST00000632801 297 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 MIR6767-201ENST00000637302 66 ntBASIC1.15□□□□□ -2.23
USP41Q3LFD5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
USP41Q3LFD5 RNU6-1189P-201ENST00000383958 107 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 SNORA27-201ENST00000384323 126 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 MIR1185-1-201ENST00000408598 86 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 Y_RNA.644-201ENST00000459006 113 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 RNU2-13P-201ENST00000515909 113 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 Y_RNA.674-201ENST00000516362 113 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 RNU6-113P-201ENST00000516653 101 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 RNU6-958P-201ENST00000516995 106 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 AC022559.1-201ENST00000520905 205 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 AP003716.2-201ENST00000528260 108 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 MIR378D2-201ENST00000580636 98 ntBASIC1.14□□□□□ -2.23
USP41Q3LFD5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.14□□□□□ -2.23
USP41Q3LFD5 AC008163.1-202ENST00000636004 2889 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.13□□□□□ -2.23
USP41Q3LFD5 RNU6-643P-201ENST00000384018 107 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 SNORA70.7-201ENST00000384159 133 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 SNORD77.3-201ENST00000391113 65 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 Y_RNA.793-201ENST00000411222 111 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 AC006461.1-201ENST00000412637 326 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 RPS29P28-201ENST00000446439 141 ntBASIC1.13□□□□□ -2.23
USP41Q3LFD5 RPS29P1-201ENST00000465274 159 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 229.3 ms