Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RNU6-806P-201ENST00000365147 105 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 Y_RNA.380-201ENST00000365663 111 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 RNU6-474P-201ENST00000384243 107 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 Y_RNA.572-201ENST00000384757 98 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.26□□□□□ -2.37
PKNOX1P55347 RNU7-185P-201ENST00000459215 60 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 Y_RNA.631-201ENST00000459607 101 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 SNORA27.4-201ENST00000516650 95 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 AC100767.1-201ENST00000528178 123 ntBASIC0.26□□□□□ -2.37
PKNOX1P55347 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.25□□□□□ -2.37
PKNOX1P55347 MTND4P29-201ENST00000503122 1372 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.25□□□□□ -2.37
PKNOX1P55347 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.66-201ENST00000362862 102 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 RNU6-1309P-201ENST00000363305 108 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.122-201ENST00000363331 96 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 SNORA1.1-201ENST00000364671 133 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 RNU1-133P-201ENST00000364867 167 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.431-201ENST00000384086 102 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 RNU6-514P-201ENST00000384208 107 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.509-201ENST00000384506 99 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 SNORD12C-201ENST00000386307 89 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 RNU6-679P-201ENST00000391003 106 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 SNORA53-201ENST00000391141 249 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 AF228730.3-201ENST00000436691 102 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 RNU6-365P-201ENST00000517113 106 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.721-201ENST00000517207 102 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 SNORD92-201ENST00000585078 85 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 Y_RNA.802-201ENST00000614892 130 ntBASIC0.25□□□□□ -2.37
PKNOX1P55347 MIR30D-201ENST00000362283 70 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 Y_RNA.16-201ENST00000362421 102 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 RNU6-770P-201ENST00000363929 105 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 Y_RNA.226-201ENST00000364337 114 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 Y_RNA.229-201ENST00000364347 113 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 VTRNA1-3-201ENST00000365645 89 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 RNU6-364P-201ENST00000384387 107 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 MIR548I3-201ENST00000408378 149 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 MIR1257-201ENST00000408490 117 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 AL138752.1-201ENST00000452964 351 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 RNU6-998P-201ENST00000515894 101 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 SNORA40.15-201ENST00000516884 107 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 RNA5SP94-201ENST00000516917 108 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 MIR4711-201ENST00000578274 70 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 MIR5688-201ENST00000580619 83 ntBASIC0.24□□□□□ -2.37
PKNOX1P55347 Y_RNA.19-201ENST00000362462 99 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 Y_RNA.24-201ENST00000362508 103 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 Y_RNA.238-201ENST00000364441 102 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 MIR518A1-201ENST00000385068 85 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1319P-201ENST00000390855 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-747P-201ENST00000390928 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-241P-201ENST00000391148 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-447P-201ENST00000410293 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1118P-201ENST00000410382 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1076P-201ENST00000410397 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-355P-201ENST00000410427 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-791P-201ENST00000410467 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-705P-201ENST00000410601 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1100P-201ENST00000410691 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-860P-201ENST00000410860 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1217P-201ENST00000411276 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-785P-201ENST00000411324 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 AL731563.1-201ENST00000442202 214 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU2-11P-201ENST00000459191 187 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-1132P-201ENST00000459214 107 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU7-96P-201ENST00000459535 64 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU6-126P-201ENST00000516685 103 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 RNU7-156P-201ENST00000517214 74 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 AC131281.1-201ENST00000522984 164 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 AP003733.2-201ENST00000529409 171 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 AC037487.3-201ENST00000606668 112 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 U6.90-201ENST00000614007 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 U6.70-201ENST00000620287 104 ntBASIC0.23□□□□□ -2.37
PKNOX1P55347 UBE2WP1-201ENST00000362030 340 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 Y_RNA.91-201ENST00000363042 107 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 SNORD44.1-201ENST00000363202 61 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 Y_RNA.269-201ENST00000364685 89 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 Y_RNA.276-201ENST00000364732 109 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 RNU6-484P-201ENST00000384016 107 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 SNORD77.3-201ENST00000391113 65 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.22□□□□□ -2.37
PKNOX1P55347 SNORA25.12-201ENST00000516202 82 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 RNU6-504P-201ENST00000516568 104 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.22□□□□□ -2.37
PKNOX1P55347 AC006006.1-201ENST00000603082 144 ntBASIC0.22□□□□□ -2.37
PKNOX1P55347 RNU6-211P-201ENST00000384047 107 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 Y_RNA.440-201ENST00000384120 114 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 MT-TF-201ENST00000387314 71 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 SNORA40.8-201ENST00000411034 126 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 AC022028.1-201ENST00000412054 408 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 SNRPGP12-201ENST00000449481 213 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 RNY3P15-201ENST00000516297 97 ntBASIC0.21□□□□□ -2.38
PKNOX1P55347 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
PKNOX1P55347 Y_RNA.7-201ENST00000362352 102 ntBASIC0.2□□□□□ -2.38
PKNOX1P55347 Y_RNA.64-201ENST00000362845 102 ntBASIC0.2□□□□□ -2.38
PKNOX1P55347 Y_RNA.116-201ENST00000363292 103 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms