Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 U6.104-201ENST00000637979 90 ntBASIC0.52□□□□□ -2.33
LIM2P55344 MIR335-201ENST00000362173 94 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.44-201ENST00000362676 108 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.82-201ENST00000363000 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.92-201ENST00000363043 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.229-201ENST00000364347 113 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.235-201ENST00000364412 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.306-201ENST00000365015 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.312-201ENST00000365089 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.322-201ENST00000365151 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 SNORA27-201ENST00000384323 126 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RNU6-1289P-201ENST00000384431 106 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.494-201ENST00000384432 111 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RNU6-125P-201ENST00000384505 107 ntBASIC0.51□□□□□ -2.33
LIM2P55344 MIR548A2-201ENST00000384956 97 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RNU6-938P-201ENST00000411285 103 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.650-201ENST00000459002 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RNU7-96P-201ENST00000459535 64 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RPS29P24-201ENST00000486345 171 ntBASIC0.51□□□□□ -2.33
LIM2P55344 RNU6-693P-201ENST00000516134 107 ntBASIC0.51□□□□□ -2.33
LIM2P55344 SNORA18.4-201ENST00000516440 124 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.777-201ENST00000516982 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 AC018659.1-201ENST00000551083 169 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.771-201ENST00000598668 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 MIR6515-201ENST00000619843 57 ntBASIC0.51□□□□□ -2.33
LIM2P55344 Y_RNA.789-201ENST00000622480 102 ntBASIC0.51□□□□□ -2.33
LIM2P55344 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
LIM2P55344 RNU6-369P-201ENST00000362515 102 ntBASIC0.5□□□□□ -2.33
LIM2P55344 RNA5SP499-201ENST00000363982 119 ntBASIC0.5□□□□□ -2.33
LIM2P55344 RNU1-133P-201ENST00000364867 167 ntBASIC0.5□□□□□ -2.33
LIM2P55344 SNORD61-201ENST00000384252 73 ntBASIC0.5□□□□□ -2.33
LIM2P55344 Y_RNA.518-201ENST00000384552 113 ntBASIC0.5□□□□□ -2.33
LIM2P55344 SNORD38B-201ENST00000384690 67 ntBASIC0.5□□□□□ -2.33
LIM2P55344 RNU6-1109P-201ENST00000391187 107 ntBASIC0.5□□□□□ -2.33
LIM2P55344 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
LIM2P55344 RNU6-1299P-201ENST00000516316 100 ntBASIC0.5□□□□□ -2.33
LIM2P55344 MIR8055-201ENST00000610739 97 ntBASIC0.5□□□□□ -2.33
LIM2P55344 U2.14-201ENST00000615943 113 ntBASIC0.5□□□□□ -2.33
LIM2P55344 SNORD38B-202ENST00000625943 69 ntBASIC0.5□□□□□ -2.33
LIM2P55344 AC023934.1-201ENST00000574529 2389 ntBASIC0.5□□□□□ -2.33
LIM2P55344 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
LIM2P55344 Y_RNA.24-201ENST00000362508 103 ntBASIC0.49□□□□□ -2.33
LIM2P55344 Y_RNA.66-201ENST00000362862 102 ntBASIC0.49□□□□□ -2.33
LIM2P55344 RNY1-201ENST00000364228 113 ntBASIC0.49□□□□□ -2.33
LIM2P55344 RNU6-934P-201ENST00000365154 107 ntBASIC0.49□□□□□ -2.33
LIM2P55344 RNU6-713P-201ENST00000384761 107 ntBASIC0.49□□□□□ -2.33
LIM2P55344 MIR18B-201ENST00000454574 71 ntBASIC0.49□□□□□ -2.33
LIM2P55344 TRBVB-201ENST00000477100 408 ntBASIC0.49□□□□□ -2.33
LIM2P55344 RNA5SP121-201ENST00000516537 101 ntBASIC0.49□□□□□ -2.33
LIM2P55344 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
LIM2P55344 RNA5SP347-201ENST00000362445 119 ntBASIC0.48□□□□□ -2.33
LIM2P55344 RNU6-484P-201ENST00000384016 107 ntBASIC0.48□□□□□ -2.33
LIM2P55344 Y_RNA.432-201ENST00000384087 111 ntBASIC0.48□□□□□ -2.33
LIM2P55344 MIR598-201ENST00000384868 97 ntBASIC0.48□□□□□ -2.33
LIM2P55344 MIR573-201ENST00000384964 99 ntBASIC0.48□□□□□ -2.33
LIM2P55344 MIR616-201ENST00000385293 97 ntBASIC0.48□□□□□ -2.33
LIM2P55344 RNU6-177P-201ENST00000411257 104 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AC244023.1-201ENST00000426884 112 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AC092628.1-201ENST00000436250 252 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.48□□□□□ -2.33
LIM2P55344 MTND5P22-201ENST00000458380 195 ntBASIC0.48□□□□□ -2.33
LIM2P55344 RNU7-62P-201ENST00000458856 62 ntBASIC0.48□□□□□ -2.33
LIM2P55344 SCARNA24.2-201ENST00000516968 130 ntBASIC0.48□□□□□ -2.33
LIM2P55344 RNU6-958P-201ENST00000516995 106 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.48□□□□□ -2.33
LIM2P55344 AC011195.1-201ENST00000578177 177 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AC242498.1-201ENST00000604134 111 ntBASIC0.48□□□□□ -2.33
LIM2P55344 AP001282.2-201ENST00000616149 309 ntBASIC0.48□□□□□ -2.33
LIM2P55344 RNU4-10P-201ENST00000364383 140 ntBASIC0.47□□□□□ -2.33
LIM2P55344 MIR613-201ENST00000385248 95 ntBASIC0.47□□□□□ -2.33
LIM2P55344 RNU6-205P-201ENST00000390858 107 ntBASIC0.47□□□□□ -2.33
LIM2P55344 RNU6-1228P-201ENST00000391014 107 ntBASIC0.47□□□□□ -2.33
LIM2P55344 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.47□□□□□ -2.33
LIM2P55344 RNU6-733P-201ENST00000410759 104 ntBASIC0.47□□□□□ -2.33
LIM2P55344 AC090844.1-201ENST00000422019 156 ntBASIC0.47□□□□□ -2.33
LIM2P55344 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.47□□□□□ -2.33
LIM2P55344 RN7SKP12-201ENST00000516275 143 ntBASIC0.47□□□□□ -2.33
LIM2P55344 MIR4282-201ENST00000583613 67 ntBASIC0.47□□□□□ -2.33
LIM2P55344 MIR6513-201ENST00000621188 64 ntBASIC0.47□□□□□ -2.33
LIM2P55344 Y_RNA.634-201ENST00000364811 113 ntBASIC0.46□□□□□ -2.34
LIM2P55344 Y_RNA.304-201ENST00000365011 112 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNU6-1189P-201ENST00000383958 107 ntBASIC0.46□□□□□ -2.34
LIM2P55344 MIR489-201ENST00000384923 84 ntBASIC0.46□□□□□ -2.34
LIM2P55344 SNORD77.3-201ENST00000391113 65 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNA5SP261-201ENST00000410536 106 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNU2-70P-201ENST00000410718 179 ntBASIC0.46□□□□□ -2.34
LIM2P55344 AC098934.3-201ENST00000430450 190 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNU6-998P-201ENST00000515894 101 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNU6-977P-201ENST00000516411 103 ntBASIC0.46□□□□□ -2.34
LIM2P55344 RNU4-54P-201ENST00000516428 129 ntBASIC0.46□□□□□ -2.34
LIM2P55344 Z83818.1-201ENST00000603584 150 ntBASIC0.46□□□□□ -2.34
LIM2P55344 SNORA1.1-201ENST00000364671 133 ntBASIC0.45□□□□□ -2.34
LIM2P55344 RNU6-740P-201ENST00000364734 105 ntBASIC0.45□□□□□ -2.34
LIM2P55344 Y_RNA.542-201ENST00000384641 111 ntBASIC0.45□□□□□ -2.34
LIM2P55344 Y_RNA.572-201ENST00000384757 98 ntBASIC0.45□□□□□ -2.34
LIM2P55344 RNU6-913P-201ENST00000390913 95 ntBASIC0.45□□□□□ -2.34
LIM2P55344 MIR548I3-201ENST00000408378 149 ntBASIC0.45□□□□□ -2.34
LIM2P55344 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.45□□□□□ -2.34
LIM2P55344 snoU13.21-201ENST00000459368 105 ntBASIC0.45□□□□□ -2.34
LIM2P55344 SNORD36C-201ENST00000516733 66 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 257.1 ms