Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RNU6-613P-201ENST00000410412 108 ntBASIC1.28□□□□□ -2.2
NEK3P51956 RNA5SP247-201ENST00000411181 105 ntBASIC1.28□□□□□ -2.2
NEK3P51956 RNU7-53P-201ENST00000516705 60 ntBASIC1.28□□□□□ -2.2
NEK3P51956 RNU6-1270P-201ENST00000517128 108 ntBASIC1.28□□□□□ -2.2
NEK3P51956 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
NEK3P51956 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
NEK3P51956 Y_RNA.60-201ENST00000362831 98 ntBASIC1.27□□□□□ -2.21
NEK3P51956 Y_RNA.307-201ENST00000365022 117 ntBASIC1.27□□□□□ -2.21
NEK3P51956 Y_RNA.308-201ENST00000365043 101 ntBASIC1.27□□□□□ -2.21
NEK3P51956 SNORA27-201ENST00000384323 126 ntBASIC1.27□□□□□ -2.21
NEK3P51956 MIR570-201ENST00000384917 97 ntBASIC1.27□□□□□ -2.21
NEK3P51956 MT-TN-201ENST00000387400 73 ntBASIC1.27□□□□□ -2.21
NEK3P51956 RNU7-73P-201ENST00000458743 63 ntBASIC1.27□□□□□ -2.21
NEK3P51956 RNU7-67P-201ENST00000459003 62 ntBASIC1.27□□□□□ -2.21
NEK3P51956 RNU6-1189P-201ENST00000383958 107 ntBASIC1.26□□□□□ -2.21
NEK3P51956 RNU6-578P-201ENST00000390980 103 ntBASIC1.26□□□□□ -2.21
NEK3P51956 RNU6-938P-201ENST00000411285 103 ntBASIC1.26□□□□□ -2.21
NEK3P51956 FABP5P4-201ENST00000437203 171 ntBASIC1.26□□□□□ -2.21
NEK3P51956 RPS29P24-201ENST00000486345 171 ntBASIC1.26□□□□□ -2.21
NEK3P51956 SNORA18.4-201ENST00000516440 124 ntBASIC1.26□□□□□ -2.21
NEK3P51956 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.26□□□□□ -2.21
NEK3P51956 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.26□□□□□ -2.21
NEK3P51956 MIR377-201ENST00000362145 69 ntBASIC1.25□□□□□ -2.21
NEK3P51956 Y_RNA.330-201ENST00000365230 109 ntBASIC1.25□□□□□ -2.21
NEK3P51956 Y_RNA.401-201ENST00000383965 117 ntBASIC1.25□□□□□ -2.21
NEK3P51956 SNORD111-201ENST00000408139 94 ntBASIC1.25□□□□□ -2.21
NEK3P51956 AL121914.1-201ENST00000450188 156 ntBASIC1.25□□□□□ -2.21
NEK3P51956 RNU7-96P-201ENST00000459535 64 ntBASIC1.25□□□□□ -2.21
NEK3P51956 Y_RNA.680-201ENST00000516441 93 ntBASIC1.25□□□□□ -2.21
NEK3P51956 RNU6-111P-201ENST00000517179 105 ntBASIC1.25□□□□□ -2.21
NEK3P51956 MIR4661-201ENST00000582720 75 ntBASIC1.25□□□□□ -2.21
NEK3P51956 AC091895.1-201ENST00000624494 256 ntBASIC1.25□□□□□ -2.21
NEK3P51956 RNU6-1292P-201ENST00000383856 107 ntBASIC1.24□□□□□ -2.21
NEK3P51956 Y_RNA.435-201ENST00000384095 112 ntBASIC1.24□□□□□ -2.21
NEK3P51956 AF228730.3-201ENST00000436691 102 ntBASIC1.24□□□□□ -2.21
NEK3P51956 Y_RNA.797-201ENST00000515977 94 ntBASIC1.24□□□□□ -2.21
NEK3P51956 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.24□□□□□ -2.21
NEK3P51956 MIR548AO-201ENST00000579992 96 ntBASIC1.24□□□□□ -2.21
NEK3P51956 Z83818.1-201ENST00000603584 150 ntBASIC1.24□□□□□ -2.21
NEK3P51956 AC108706.1-201ENST00000611053 297 ntBASIC1.24□□□□□ -2.21
NEK3P51956 AC106800.4-201ENST00000614905 153 ntBASIC1.24□□□□□ -2.21
NEK3P51956 MIR6516-201ENST00000630554 81 ntBASIC1.24□□□□□ -2.21
NEK3P51956 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
NEK3P51956 SNORA25.9-201ENST00000365087 128 ntBASIC1.23□□□□□ -2.21
NEK3P51956 RNU6-53P-201ENST00000365367 106 ntBASIC1.23□□□□□ -2.21
NEK3P51956 RNU4-70P-201ENST00000384579 139 ntBASIC1.23□□□□□ -2.21
NEK3P51956 Y_RNA.571-201ENST00000384753 98 ntBASIC1.23□□□□□ -2.21
NEK3P51956 MT-TG-201ENST00000387429 68 ntBASIC1.23□□□□□ -2.21
NEK3P51956 RNU6-493P-201ENST00000391321 108 ntBASIC1.23□□□□□ -2.21
NEK3P51956 UBL5P1-201ENST00000507979 193 ntBASIC1.23□□□□□ -2.21
NEK3P51956 AC131055.1-201ENST00000584626 316 ntBASIC1.23□□□□□ -2.21
NEK3P51956 AL365205.2-201ENST00000594586 68 ntBASIC1.23□□□□□ -2.21
NEK3P51956 MIR8070-201ENST00000616510 88 ntBASIC1.23□□□□□ -2.21
NEK3P51956 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
NEK3P51956 Y_RNA.200-201ENST00000364018 102 ntBASIC1.22□□□□□ -2.21
NEK3P51956 SNORD113.3-201ENST00000364630 78 ntBASIC1.22□□□□□ -2.21
NEK3P51956 RNU6-574P-201ENST00000384265 107 ntBASIC1.22□□□□□ -2.21
NEK3P51956 snosnR66.1-201ENST00000391095 99 ntBASIC1.22□□□□□ -2.21
NEK3P51956 OR2A41P-201ENST00000473586 105 ntBASIC1.22□□□□□ -2.21
NEK3P51956 RN7SKP179-201ENST00000516126 217 ntBASIC1.22□□□□□ -2.21
NEK3P51956 RNY3P16-201ENST00000516338 101 ntBASIC1.22□□□□□ -2.21
NEK3P51956 SNORD116-25-201ENST00000516517 92 ntBASIC1.22□□□□□ -2.21
NEK3P51956 SNORD36C-201ENST00000516733 66 ntBASIC1.22□□□□□ -2.21
NEK3P51956 AP000753.3-201ENST00000604083 169 ntBASIC1.22□□□□□ -2.21
NEK3P51956 Y_RNA.168-201ENST00000363740 102 ntBASIC1.21□□□□□ -2.22
NEK3P51956 Y_RNA.226-201ENST00000364337 114 ntBASIC1.21□□□□□ -2.22
NEK3P51956 RNU6-275P-201ENST00000364910 107 ntBASIC1.21□□□□□ -2.22
NEK3P51956 Y_RNA.440-201ENST00000384120 114 ntBASIC1.21□□□□□ -2.22
NEK3P51956 Y_RNA.494-201ENST00000384432 111 ntBASIC1.21□□□□□ -2.22
NEK3P51956 MIR499A-201ENST00000384903 122 ntBASIC1.21□□□□□ -2.22
NEK3P51956 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.21□□□□□ -2.22
NEK3P51956 AL035398.1-201ENST00000430869 322 ntBASIC1.21□□□□□ -2.22
NEK3P51956 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.21□□□□□ -2.22
NEK3P51956 RNU6-561P-201ENST00000516222 102 ntBASIC1.21□□□□□ -2.22
NEK3P51956 MIR4308-201ENST00000580634 81 ntBASIC1.21□□□□□ -2.22
NEK3P51956 MIR378D2-201ENST00000580636 98 ntBASIC1.21□□□□□ -2.22
NEK3P51956 MIR4264-201ENST00000583520 66 ntBASIC1.21□□□□□ -2.22
NEK3P51956 AC009779.6-201ENST00000603972 165 ntBASIC1.21□□□□□ -2.22
NEK3P51956 RNU2-4P-201ENST00000606190 192 ntBASIC1.21□□□□□ -2.22
NEK3P51956 Y_RNA.23-201ENST00000362496 106 ntBASIC1.2□□□□□ -2.22
NEK3P51956 Y_RNA.75-201ENST00000362927 97 ntBASIC1.2□□□□□ -2.22
NEK3P51956 Y_RNA.83-201ENST00000363005 113 ntBASIC1.2□□□□□ -2.22
NEK3P51956 MIR1285-1-201ENST00000408593 84 ntBASIC1.2□□□□□ -2.22
NEK3P51956 SNORD124-201ENST00000459577 104 ntBASIC1.2□□□□□ -2.22
NEK3P51956 RNU6-998P-201ENST00000515894 101 ntBASIC1.2□□□□□ -2.22
NEK3P51956 RNU6-958P-201ENST00000516995 106 ntBASIC1.2□□□□□ -2.22
NEK3P51956 AC036111.3-201ENST00000526389 112 ntBASIC1.2□□□□□ -2.22
NEK3P51956 MIR411-201ENST00000362239 96 ntBASIC1.19□□□□□ -2.22
NEK3P51956 RNU6-923P-201ENST00000364753 107 ntBASIC1.19□□□□□ -2.22
NEK3P51956 SNORD77.3-201ENST00000391113 65 ntBASIC1.19□□□□□ -2.22
NEK3P51956 MIR942-201ENST00000401111 86 ntBASIC1.19□□□□□ -2.22
NEK3P51956 MIR1287-201ENST00000408492 90 ntBASIC1.19□□□□□ -2.22
NEK3P51956 POLR2J4-204ENST00000418424 324 ntBASIC1.19□□□□□ -2.22
NEK3P51956 RNU7-80P-201ENST00000459562 61 ntBASIC1.19□□□□□ -2.22
NEK3P51956 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.19□□□□□ -2.22
NEK3P51956 Y_RNA.182-201ENST00000363880 111 ntBASIC1.18□□□□□ -2.22
NEK3P51956 Y_RNA.188-201ENST00000363952 111 ntBASIC1.18□□□□□ -2.22
NEK3P51956 RNU6-580P-201ENST00000365159 107 ntBASIC1.18□□□□□ -2.22
NEK3P51956 SNORA1-201ENST00000384107 130 ntBASIC1.18□□□□□ -2.22
NEK3P51956 Y_RNA.454-201ENST00000384224 113 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 1160.7 ms