Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.634-201ENST00000364811 113 ntBASIC0.73□□□□□ -2.29
CDX1P47902 SNORA24-201ENST00000384096 131 ntBASIC0.73□□□□□ -2.29
CDX1P47902 Y_RNA.459-201ENST00000384251 102 ntBASIC0.73□□□□□ -2.29
CDX1P47902 AL606845.1-201ENST00000404881 255 ntBASIC0.73□□□□□ -2.29
CDX1P47902 RNU6-938P-201ENST00000411285 103 ntBASIC0.73□□□□□ -2.29
CDX1P47902 RNU7-53P-201ENST00000516705 60 ntBASIC0.73□□□□□ -2.29
CDX1P47902 SNORD36C-201ENST00000516733 66 ntBASIC0.73□□□□□ -2.29
CDX1P47902 AL365265.1-201ENST00000621045 234 ntBASIC0.73□□□□□ -2.29
CDX1P47902 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
CDX1P47902 Y_RNA.118-201ENST00000363300 101 ntBASIC0.72□□□□□ -2.29
CDX1P47902 Y_RNA.122-201ENST00000363331 96 ntBASIC0.72□□□□□ -2.29
CDX1P47902 SNORA63C-201ENST00000364578 129 ntBASIC0.72□□□□□ -2.29
CDX1P47902 RNU6-125P-201ENST00000384505 107 ntBASIC0.72□□□□□ -2.29
CDX1P47902 SNORD38B-201ENST00000384690 67 ntBASIC0.72□□□□□ -2.29
CDX1P47902 MIR548A2-201ENST00000384956 97 ntBASIC0.72□□□□□ -2.29
CDX1P47902 MIR518E-201ENST00000385252 88 ntBASIC0.72□□□□□ -2.29
CDX1P47902 RNU6-1228P-201ENST00000391014 107 ntBASIC0.72□□□□□ -2.29
CDX1P47902 SNRPGP8-201ENST00000454064 226 ntBASIC0.72□□□□□ -2.29
CDX1P47902 RPS29P24-201ENST00000486345 171 ntBASIC0.72□□□□□ -2.29
CDX1P47902 RNA5SP153-201ENST00000516498 76 ntBASIC0.72□□□□□ -2.29
CDX1P47902 RNU6-453P-201ENST00000516819 85 ntBASIC0.72□□□□□ -2.29
CDX1P47902 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.72□□□□□ -2.29
CDX1P47902 MIR4264-201ENST00000583520 66 ntBASIC0.72□□□□□ -2.29
CDX1P47902 AC013244.2-201ENST00000603396 103 ntBASIC0.72□□□□□ -2.29
CDX1P47902 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.72□□□□□ -2.29
CDX1P47902 AC104465.1-201ENST00000611365 139 ntBASIC0.72□□□□□ -2.29
CDX1P47902 SNORD38B-202ENST00000625943 69 ntBASIC0.72□□□□□ -2.29
CDX1P47902 MIR6767-201ENST00000637302 66 ntBASIC0.72□□□□□ -2.29
CDX1P47902 Y_RNA.91-201ENST00000363042 107 ntBASIC0.71□□□□□ -2.3
CDX1P47902 snoU2_19.4-201ENST00000364329 80 ntBASIC0.71□□□□□ -2.3
CDX1P47902 Y_RNA.416-201ENST00000384014 113 ntBASIC0.71□□□□□ -2.3
CDX1P47902 Y_RNA.508-201ENST00000384502 114 ntBASIC0.71□□□□□ -2.3
CDX1P47902 MIR520E-201ENST00000384867 87 ntBASIC0.71□□□□□ -2.3
CDX1P47902 MIR616-201ENST00000385293 97 ntBASIC0.71□□□□□ -2.3
CDX1P47902 MIR1827-201ENST00000408549 66 ntBASIC0.71□□□□□ -2.3
CDX1P47902 AC090844.1-201ENST00000422019 156 ntBASIC0.71□□□□□ -2.3
CDX1P47902 AF228730.3-201ENST00000436691 102 ntBASIC0.71□□□□□ -2.3
CDX1P47902 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.71□□□□□ -2.3
CDX1P47902 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.71□□□□□ -2.3
CDX1P47902 MIR377-201ENST00000362145 69 ntBASIC0.7□□□□□ -2.3
CDX1P47902 Y_RNA.47-201ENST00000362697 108 ntBASIC0.7□□□□□ -2.3
CDX1P47902 Y_RNA.149-201ENST00000363558 117 ntBASIC0.7□□□□□ -2.3
CDX1P47902 SNORD45.3-201ENST00000363836 72 ntBASIC0.7□□□□□ -2.3
CDX1P47902 Y_RNA.304-201ENST00000365011 112 ntBASIC0.7□□□□□ -2.3
CDX1P47902 RNU6-934P-201ENST00000365154 107 ntBASIC0.7□□□□□ -2.3
CDX1P47902 RNU6-1189P-201ENST00000383958 107 ntBASIC0.7□□□□□ -2.3
CDX1P47902 MIR548F4-201ENST00000408515 105 ntBASIC0.7□□□□□ -2.3
CDX1P47902 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
CDX1P47902 AL138752.1-201ENST00000452964 351 ntBASIC0.7□□□□□ -2.3
CDX1P47902 RNU7-73P-201ENST00000458743 63 ntBASIC0.7□□□□□ -2.3
CDX1P47902 AL117187.1-201ENST00000555482 181 ntBASIC0.7□□□□□ -2.3
CDX1P47902 MIR4282-201ENST00000583613 67 ntBASIC0.7□□□□□ -2.3
CDX1P47902 AL078603.1-201ENST00000603824 313 ntBASIC0.7□□□□□ -2.3
CDX1P47902 MIR342-201ENST00000362212 99 ntBASIC0.69□□□□□ -2.3
CDX1P47902 MIR373-201ENST00000362273 69 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.7-201ENST00000362352 102 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.66-201ENST00000362862 102 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.277-201ENST00000364754 102 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNU6-580P-201ENST00000365159 107 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.352-201ENST00000365439 102 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.355-201ENST00000365462 98 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.396-201ENST00000383949 103 ntBASIC0.69□□□□□ -2.3
CDX1P47902 Y_RNA.410-201ENST00000383992 113 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNU6-484P-201ENST00000384016 107 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNU6-472P-201ENST00000384299 107 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNU6-110P-201ENST00000384508 104 ntBASIC0.69□□□□□ -2.3
CDX1P47902 SNORD105-201ENST00000386910 85 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNU6-913P-201ENST00000390913 95 ntBASIC0.69□□□□□ -2.3
CDX1P47902 SNORA79-201ENST00000408376 140 ntBASIC0.69□□□□□ -2.3
CDX1P47902 AC006461.1-201ENST00000412637 326 ntBASIC0.69□□□□□ -2.3
CDX1P47902 RNA5SP220-201ENST00000516298 104 ntBASIC0.69□□□□□ -2.3
CDX1P47902 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
CDX1P47902 SNORD114-2-201ENST00000363953 78 ntBASIC0.68□□□□□ -2.3
CDX1P47902 Y_RNA.262-201ENST00000364641 102 ntBASIC0.68□□□□□ -2.3
CDX1P47902 SNORD83.1-201ENST00000411362 77 ntBASIC0.68□□□□□ -2.3
CDX1P47902 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.68□□□□□ -2.3
CDX1P47902 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
CDX1P47902 AC244023.1-201ENST00000426884 112 ntBASIC0.68□□□□□ -2.3
CDX1P47902 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.68□□□□□ -2.3
CDX1P47902 RNU7-62P-201ENST00000458856 62 ntBASIC0.68□□□□□ -2.3
CDX1P47902 snoU13.21-201ENST00000459368 105 ntBASIC0.68□□□□□ -2.3
CDX1P47902 RNU6-977P-201ENST00000516411 103 ntBASIC0.68□□□□□ -2.3
CDX1P47902 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
CDX1P47902 AC242498.1-201ENST00000604134 111 ntBASIC0.68□□□□□ -2.3
CDX1P47902 MIR8055-201ENST00000610739 97 ntBASIC0.68□□□□□ -2.3
CDX1P47902 MIR6734-201ENST00000621166 68 ntBASIC0.68□□□□□ -2.3
CDX1P47902 SNORA1.1-201ENST00000364671 133 ntBASIC0.67□□□□□ -2.3
CDX1P47902 RNU6-728P-201ENST00000365375 104 ntBASIC0.67□□□□□ -2.3
CDX1P47902 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
CDX1P47902 RNU6-738P-201ENST00000384531 106 ntBASIC0.67□□□□□ -2.3
CDX1P47902 SNORD77.3-201ENST00000391113 65 ntBASIC0.67□□□□□ -2.3
CDX1P47902 RNU1-119P-201ENST00000391122 165 ntBASIC0.67□□□□□ -2.3
CDX1P47902 RNU2-11P-201ENST00000459191 187 ntBASIC0.67□□□□□ -2.3
CDX1P47902 RNU7-96P-201ENST00000459535 64 ntBASIC0.67□□□□□ -2.3
CDX1P47902 RPS29P1-201ENST00000465274 159 ntBASIC0.67□□□□□ -2.3
CDX1P47902 MIR4771-2-201ENST00000577758 74 ntBASIC0.67□□□□□ -2.3
CDX1P47902 MIR3973-201ENST00000579824 107 ntBASIC0.67□□□□□ -2.3
CDX1P47902 MIR4771-1-201ENST00000582617 74 ntBASIC0.67□□□□□ -2.3
CDX1P47902 SNORA4-201ENST00000584302 138 ntBASIC0.67□□□□□ -2.3
CDX1P47902 MIR6788-201ENST00000618842 66 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms