Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNY3P16-201ENST00000516338 101 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 AC103810.9-201ENST00000606688 112 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.87□□□□□ -2.27
TNFRSF4P43489 MIR4251-201ENST00000635819 61 ntBASIC0.87□□□□□ -2.27
TNFRSF4P43489 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.20-201ENST00000362479 113 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.36-201ENST00000362602 112 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 SNORD115-28-201ENST00000363931 81 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.330-201ENST00000365230 109 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 RNY3P5-201ENST00000384127 102 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.447-201ENST00000384184 113 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.478-201ENST00000384358 107 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 SNORA51.10-201ENST00000384418 136 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.539-201ENST00000384635 107 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 RNU6-493P-201ENST00000391321 108 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.86□□□□□ -2.27
TNFRSF4P43489 MTND1P19-201ENST00000511780 315 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 Y_RNA.680-201ENST00000516441 93 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 AC109810.1-201ENST00000534066 224 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 FAM71BP1-201ENST00000604431 523 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 AC108706.1-201ENST00000611053 297 ntBASIC0.86□□□□□ -2.27
TNFRSF4P43489 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
TNFRSF4P43489 Y_RNA.91-201ENST00000363042 107 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 SNORD45.3-201ENST00000363836 72 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 Y_RNA.241-201ENST00000364470 117 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 RNU6-1228P-201ENST00000391014 107 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 SNORA79-201ENST00000408376 140 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 AC107297.1-201ENST00000459991 176 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 RNU6-1023P-201ENST00000516137 106 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 AC011921.3-201ENST00000605540 361 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 MIR4791-201ENST00000607666 84 ntBASIC0.85□□□□□ -2.27
TNFRSF4P43489 AL442644.1-201ENST00000454390 3105 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU6-923P-201ENST00000364753 107 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 Y_RNA.634-201ENST00000364811 113 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU6-728P-201ENST00000365375 104 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 SNORA22-201ENST00000383907 134 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU6-484P-201ENST00000384016 107 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 SNORD61-201ENST00000384252 73 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 SNORA22C-201ENST00000384614 134 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 MIR518F-201ENST00000384973 87 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU6-847P-201ENST00000411115 108 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU2-55P-201ENST00000411146 174 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 Y_RNA.626-201ENST00000411288 95 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.84□□□□□ -2.27
TNFRSF4P43489 SNRPGP8-201ENST00000454064 226 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 RNU6-504P-201ENST00000516568 104 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 AC007751.1-201ENST00000529260 376 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.84□□□□□ -2.27
TNFRSF4P43489 AC004817.2-201ENST00000561794 651 ntBASIC0.84□□□□□ -2.27
TNFRSF4P43489 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.84□□□□□ -2.27
TNFRSF4P43489 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU6-103P-201ENST00000363686 107 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU1-133P-201ENST00000364867 167 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNY4P28-201ENST00000365281 93 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 SNORD24-201ENST00000383884 75 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 MIR548A2-201ENST00000384956 97 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU4-71P-201ENST00000516258 113 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU6-111P-201ENST00000517179 105 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.83□□□□□ -2.28
TNFRSF4P43489 RNU2-4P-201ENST00000606190 192 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 SEPT14P17-201ENST00000617978 177 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 AC243994.1-201ENST00000618627 109 ntBASIC0.83□□□□□ -2.28
TNFRSF4P43489 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.82□□□□□ -2.28
TNFRSF4P43489 Y_RNA.37-201ENST00000362606 108 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 Y_RNA.66-201ENST00000362862 102 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RNU6-888P-201ENST00000363010 101 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 Y_RNA.537-201ENST00000384626 109 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 MIR1185-1-201ENST00000408598 86 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RPS3AP1-201ENST00000413190 320 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 FABP5P4-201ENST00000437203 171 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 AC087499.4-201ENST00000448505 178 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 AL121914.1-201ENST00000450188 156 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RNU7-67P-201ENST00000459003 62 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 Y_RNA.797-201ENST00000515977 94 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RNA5SP436-201ENST00000516020 115 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 ACA64.5-201ENST00000516207 127 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RNU6-561P-201ENST00000516222 102 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 RNA5SP153-201ENST00000516498 76 ntBASIC0.82□□□□□ -2.28
TNFRSF4P43489 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
TNFRSF4P43489 Y_RNA.7-201ENST00000362352 102 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 Y_RNA.393-201ENST00000383936 102 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 snosnR66.1-201ENST00000391095 99 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 RNU6-197P-201ENST00000516680 100 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 AP003716.2-201ENST00000528260 108 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 AP003484.1-201ENST00000530974 250 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 AC023827.1-201ENST00000569247 97 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 MIR4744-201ENST00000581563 82 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 MTND1P7-201ENST00000632801 297 ntBASIC0.81□□□□□ -2.28
TNFRSF4P43489 SNORD115-34-201ENST00000362441 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-12-201ENST00000362583 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-29-201ENST00000362834 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-9-201ENST00000362912 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-21-201ENST00000362963 81 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-14-201ENST00000363090 81 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-13-201ENST00000363358 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-41-201ENST00000363608 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-11-201ENST00000363616 82 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 164.6 ms