Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-197P-201ENST00000516680 100 ntBASIC1.07□□□□□ -2.24
MSH2P43246 RNU11-2P-201ENST00000516898 142 ntBASIC1.07□□□□□ -2.24
MSH2P43246 AP003484.1-201ENST00000530974 250 ntBASIC1.07□□□□□ -2.24
MSH2P43246 SEPT14P17-201ENST00000617978 177 ntBASIC1.07□□□□□ -2.24
MSH2P43246 AC134878.1-201ENST00000619901 243 ntBASIC1.07□□□□□ -2.24
MSH2P43246 MTND1P7-201ENST00000632801 297 ntBASIC1.07□□□□□ -2.24
MSH2P43246 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
MSH2P43246 Y_RNA.7-201ENST00000362352 102 ntBASIC1.06□□□□□ -2.24
MSH2P43246 RNU6-923P-201ENST00000364753 107 ntBASIC1.06□□□□□ -2.24
MSH2P43246 SNORA24-201ENST00000384096 131 ntBASIC1.06□□□□□ -2.24
MSH2P43246 SNORA40.5-201ENST00000391061 128 ntBASIC1.06□□□□□ -2.24
MSH2P43246 RNU4-43P-201ENST00000410628 137 ntBASIC1.06□□□□□ -2.24
MSH2P43246 SNORA18.4-201ENST00000516440 124 ntBASIC1.06□□□□□ -2.24
MSH2P43246 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
MSH2P43246 MIR4308-201ENST00000580634 81 ntBASIC1.06□□□□□ -2.24
MSH2P43246 MIR4661-201ENST00000582720 75 ntBASIC1.06□□□□□ -2.24
MSH2P43246 MIR4295-201ENST00000585286 85 ntBASIC1.06□□□□□ -2.24
MSH2P43246 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
MSH2P43246 Y_RNA.23-201ENST00000362496 106 ntBASIC1.05□□□□□ -2.24
MSH2P43246 SNORD114-24-201ENST00000365029 72 ntBASIC1.05□□□□□ -2.24
MSH2P43246 Y_RNA.330-201ENST00000365230 109 ntBASIC1.05□□□□□ -2.24
MSH2P43246 AF228730.3-201ENST00000436691 102 ntBASIC1.05□□□□□ -2.24
MSH2P43246 SNORD36C-201ENST00000516733 66 ntBASIC1.05□□□□□ -2.24
MSH2P43246 MIR548AO-201ENST00000579992 96 ntBASIC1.05□□□□□ -2.24
MSH2P43246 AP000942.4-201ENST00000604811 241 ntBASIC1.05□□□□□ -2.24
MSH2P43246 RNU2-4P-201ENST00000606190 192 ntBASIC1.05□□□□□ -2.24
MSH2P43246 SNORD114-21-201ENST00000606412 72 ntBASIC1.05□□□□□ -2.24
MSH2P43246 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
MSH2P43246 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.05□□□□□ -2.24
MSH2P43246 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.04□□□□□ -2.24
MSH2P43246 Y_RNA.121-201ENST00000363309 113 ntBASIC1.04□□□□□ -2.24
MSH2P43246 Y_RNA.238-201ENST00000364441 102 ntBASIC1.04□□□□□ -2.24
MSH2P43246 RNU6-578P-201ENST00000390980 103 ntBASIC1.04□□□□□ -2.24
MSH2P43246 SNORA79-201ENST00000408376 140 ntBASIC1.04□□□□□ -2.24
MSH2P43246 AL121914.1-201ENST00000450188 156 ntBASIC1.04□□□□□ -2.24
MSH2P43246 AC087343.1-201ENST00000477341 475 ntBASIC1.04□□□□□ -2.24
MSH2P43246 AC108706.1-201ENST00000611053 297 ntBASIC1.04□□□□□ -2.24
MSH2P43246 RNU6-53P-201ENST00000365367 106 ntBASIC1.03□□□□□ -2.24
MSH2P43246 Y_RNA.410-201ENST00000383992 113 ntBASIC1.03□□□□□ -2.24
MSH2P43246 SNORA1-201ENST00000384107 130 ntBASIC1.03□□□□□ -2.24
MSH2P43246 Y_RNA.489-201ENST00000384410 101 ntBASIC1.03□□□□□ -2.24
MSH2P43246 Y_RNA.571-201ENST00000384753 98 ntBASIC1.03□□□□□ -2.24
MSH2P43246 MIR4781-201ENST00000585250 76 ntBASIC1.03□□□□□ -2.24
MSH2P43246 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.24
MSH2P43246 MIR6516-201ENST00000630554 81 ntBASIC1.03□□□□□ -2.24
MSH2P43246 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
MSH2P43246 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
MSH2P43246 Y_RNA.164-201ENST00000363709 102 ntBASIC1.02□□□□□ -2.25
MSH2P43246 Y_RNA.200-201ENST00000364018 102 ntBASIC1.02□□□□□ -2.25
MSH2P43246 Y_RNA.401-201ENST00000383965 117 ntBASIC1.02□□□□□ -2.25
MSH2P43246 SNORA27-201ENST00000384323 126 ntBASIC1.02□□□□□ -2.25
MSH2P43246 MIR200A-201ENST00000384875 90 ntBASIC1.02□□□□□ -2.25
MSH2P43246 Y_RNA.618-201ENST00000410949 107 ntBASIC1.02□□□□□ -2.25
MSH2P43246 RNU7-67P-201ENST00000459003 62 ntBASIC1.02□□□□□ -2.25
MSH2P43246 snoU13.16-201ENST00000459350 104 ntBASIC1.02□□□□□ -2.25
MSH2P43246 PDCD5P2-201ENST00000507570 312 ntBASIC1.02□□□□□ -2.25
MSH2P43246 Y_RNA.797-201ENST00000515977 94 ntBASIC1.02□□□□□ -2.25
MSH2P43246 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.02□□□□□ -2.25
MSH2P43246 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.01□□□□□ -2.25
MSH2P43246 Y_RNA.4-201ENST00000362333 112 ntBASIC1.01□□□□□ -2.25
MSH2P43246 RNU4-70P-201ENST00000384579 139 ntBASIC1.01□□□□□ -2.25
MSH2P43246 SNORD77.3-201ENST00000391113 65 ntBASIC1.01□□□□□ -2.25
MSH2P43246 MIR942-201ENST00000401111 86 ntBASIC1.01□□□□□ -2.25
MSH2P43246 RPS29P24-201ENST00000486345 171 ntBASIC1.01□□□□□ -2.25
MSH2P43246 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.01□□□□□ -2.25
MSH2P43246 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.01□□□□□ -2.25
MSH2P43246 MIR2115-201ENST00000516657 100 ntBASIC1.01□□□□□ -2.25
MSH2P43246 RNU6-958P-201ENST00000516995 106 ntBASIC1.01□□□□□ -2.25
MSH2P43246 AC023827.1-201ENST00000569247 97 ntBASIC1.01□□□□□ -2.25
MSH2P43246 AC131055.1-201ENST00000584626 316 ntBASIC1.01□□□□□ -2.25
MSH2P43246 AC009779.6-201ENST00000603972 165 ntBASIC1.01□□□□□ -2.25
MSH2P43246 MIR411-201ENST00000362239 96 ntBASIC1□□□□□ -2.25
MSH2P43246 Y_RNA.83-201ENST00000363005 113 ntBASIC1□□□□□ -2.25
MSH2P43246 Y_RNA.182-201ENST00000363880 111 ntBASIC1□□□□□ -2.25
MSH2P43246 Y_RNA.188-201ENST00000363952 111 ntBASIC1□□□□□ -2.25
MSH2P43246 RNU6-654P-201ENST00000364373 107 ntBASIC1□□□□□ -2.25
MSH2P43246 RNU6-396P-201ENST00000365369 105 ntBASIC1□□□□□ -2.25
MSH2P43246 RNU6-1189P-201ENST00000383958 107 ntBASIC1□□□□□ -2.25
MSH2P43246 Y_RNA.542-201ENST00000384641 111 ntBASIC1□□□□□ -2.25
MSH2P43246 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1□□□□□ -2.25
MSH2P43246 RNU6-613P-201ENST00000410412 108 ntBASIC1□□□□□ -2.25
MSH2P43246 POLR2J4-204ENST00000418424 324 ntBASIC1□□□□□ -2.25
MSH2P43246 RNU7-73P-201ENST00000458743 63 ntBASIC1□□□□□ -2.25
MSH2P43246 ACA64.5-201ENST00000516207 127 ntBASIC1□□□□□ -2.25
MSH2P43246 RNU4-38P-201ENST00000364472 129 ntBASIC0.99□□□□□ -2.25
MSH2P43246 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
MSH2P43246 Y_RNA.440-201ENST00000384120 114 ntBASIC0.99□□□□□ -2.25
MSH2P43246 RNU6-918P-201ENST00000391219 106 ntBASIC0.99□□□□□ -2.25
MSH2P43246 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.99□□□□□ -2.25
MSH2P43246 RNU7-53P-201ENST00000516705 60 ntBASIC0.99□□□□□ -2.25
MSH2P43246 RNU6-1271P-201ENST00000517049 105 ntBASIC0.99□□□□□ -2.25
MSH2P43246 AC036111.3-201ENST00000526389 112 ntBASIC0.99□□□□□ -2.25
MSH2P43246 MIR378D2-201ENST00000580636 98 ntBASIC0.99□□□□□ -2.25
MSH2P43246 MIR3129-201ENST00000581095 76 ntBASIC0.99□□□□□ -2.25
MSH2P43246 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
MSH2P43246 RNU6-978P-201ENST00000364371 103 ntBASIC0.98□□□□□ -2.25
MSH2P43246 RNU6-275P-201ENST00000364910 107 ntBASIC0.98□□□□□ -2.25
MSH2P43246 Y_RNA.435-201ENST00000384095 112 ntBASIC0.98□□□□□ -2.25
MSH2P43246 MT-TG-201ENST00000387429 68 ntBASIC0.98□□□□□ -2.25
MSH2P43246 RNU6-913P-201ENST00000390913 95 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms