Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR29B1-201ENST00000385015 81 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 MIR124-2-201ENST00000385081 109 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 SNORD2-201ENST00000459163 69 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 AL133215.3-201ENST00000609801 448 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 RNU6-108P-201ENST00000365558 107 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 MIR548O-201ENST00000408583 114 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 CEP57L1P1-201ENST00000430943 1201 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 MTND3P21-201ENST00000433774 331 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 GPR143P-201ENST00000434155 205 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC-1.91□□□□□ -2.71
CUX1P39880 Vault.3-201ENST00000516676 95 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 AC100767.1-201ENST00000528178 123 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 AC087752.4-201ENST00000605911 462 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 RNU7-10P-201ENST00000607194 63 ntBASIC-1.91□□□□□ -2.71
CUX1P39880 RNA5SP133-201ENST00000363368 119 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 Y_RNA.302-201ENST00000364997 102 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 MIR548I3-201ENST00000408378 149 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-1.91□□□□□ -2.72
CUX1P39880 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 AL512427.1-201ENST00000618593 349 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 AC073534.2-201ENST00000620377 381 ntBASIC-1.91□□□□□ -2.72
CUX1P39880 RNU4-92P-201ENST00000363783 136 ntBASIC-1.92□□□□□ -2.72
CUX1P39880 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.92□□□□□ -2.72
CUX1P39880 RNU6-597P-201ENST00000365620 102 ntBASIC-1.92□□□□□ -2.72
CUX1P39880 AC022878.1-201ENST00000530684 149 ntBASIC-1.92□□□□□ -2.72
CUX1P39880 AC087683.2-201ENST00000611384 326 ntBASIC-1.92□□□□□ -2.72
CUX1P39880 RNA5SP93-201ENST00000362525 114 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 RNY1P16-201ENST00000363063 111 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 RNU6-501P-201ENST00000364072 100 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 RNY4P28-201ENST00000365281 93 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 Y_RNA.577-201ENST00000384794 101 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 MIR617-201ENST00000385030 97 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 RNU6-903P-201ENST00000391270 109 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 RNU6-938P-201ENST00000411285 103 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 AC104850.1-201ENST00000435940 476 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 MTND3P1-201ENST00000441336 220 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 AC068339.1-201ENST00000526965 141 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 DISC2.1-201ENST00000612827 205 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 AC103705.1-201ENST00000619013 241 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 AL121895.2-201ENST00000619558 447 ntBASIC-1.93□□□□□ -2.72
CUX1P39880 SNORD115-30-201ENST00000364117 82 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 Y_RNA.430-201ENST00000384081 110 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 MIR599-201ENST00000385069 95 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 RNU6-1086P-201ENST00000410930 100 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-1.94□□□□□ -2.72
CUX1P39880 MTCO2P30-201ENST00000503662 364 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 MIR4460-201ENST00000577862 86 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 MIR5696-201ENST00000578474 85 ntBASIC-1.94□□□□□ -2.72
CUX1P39880 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-1.94□□□□□ -2.72
CUX1P39880 Y_RNA.7-201ENST00000362352 102 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU6-214P-201ENST00000384130 107 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 MIR519E-201ENST00000385075 84 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU6-1203P-201ENST00000410703 110 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU2-61P-201ENST00000411069 191 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU6-1114P-201ENST00000516022 107 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU7-13P-201ENST00000516413 62 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 MTND5P40-201ENST00000559945 246 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 AC055872.1-201ENST00000570978 278 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 Z84480.1-201ENST00000605131 311 ntBASIC-1.95□□□□□ -2.72
CUX1P39880 RNU2-14P-201ENST00000411053 191 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 AC084290.1-201ENST00000434995 374 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 AC004467.1-201ENST00000615678 330 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 Y_RNA.119-201ENST00000363301 96 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 RNU6-312P-201ENST00000364629 107 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 SNORA18-201ENST00000384416 132 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 MIR652-201ENST00000385278 98 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 RNU6-625P-201ENST00000459412 107 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 TRAJ51-201ENST00000504127 63 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 RNU6-998P-201ENST00000515894 101 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.96□□□□□ -2.72
CUX1P39880 RNU6-429P-201ENST00000384582 108 ntBASIC-1.97□□□□□ -2.73
CUX1P39880 RNY3P9-201ENST00000384727 106 ntBASIC-1.97□□□□□ -2.73
CUX1P39880 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.97□□□□□ -2.73
CUX1P39880 MTCO2P21-201ENST00000419780 677 ntBASIC-1.97□□□□□ -2.73
CUX1P39880 RNU7-96P-201ENST00000459535 64 ntBASIC-1.97□□□□□ -2.73
CUX1P39880 AL607023.1-201ENST00000620045 248 ntBASIC-1.97□□□□□ -2.73
CUX1P39880 MIR302B-201ENST00000362188 73 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 RNY3P14-201ENST00000384309 102 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 RNU6-831P-201ENST00000384548 107 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 AL031003.1-201ENST00000404229 172 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 EIF1P2-201ENST00000428233 350 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 RNU7-79P-201ENST00000516082 62 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-1.98□□□□□ -2.73
CUX1P39880 AP003357.1-201ENST00000604497 148 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 RN7SKP299-201ENST00000606679 301 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 AC027449.1-201ENST00000608890 407 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 AC079248.2-201ENST00000623779 326 ntBASIC-1.98□□□□□ -2.73
CUX1P39880 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 MTND3P23-201ENST00000431980 347 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 MTCO2P16-201ENST00000436962 677 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 SNORD54-201ENST00000459159 67 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 MTND4P7-201ENST00000523876 130 ntBASIC-1.99□□□□□ -2.73
CUX1P39880 AC145350.1-201ENST00000567426 208 ntBASIC-1.99□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms