Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-474P-201ENST00000384243 107 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU6-102P-201ENST00000384485 104 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU2-13P-201ENST00000515909 113 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU6-365P-201ENST00000517113 106 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 AL355297.3-201ENST00000604082 446 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU4-10P-201ENST00000364383 140 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU6-1138P-201ENST00000365359 106 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
SCN1AP35498 MIR548P-201ENST00000408336 84 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU7-62P-201ENST00000458856 62 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.637-201ENST00000459424 114 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 RNU6-1110P-201ENST00000516462 101 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.37□□□□□ -2.35
SCN1AP35498 MIR4662B-201ENST00000579498 81 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 MIR5688-201ENST00000580619 83 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 AC023934.1-201ENST00000574529 2389 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 Y_RNA.84-201ENST00000363011 104 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 Y_RNA.286-201ENST00000364813 102 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 RNU5E-4P-201ENST00000364931 120 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 RNU4-17P-201ENST00000365598 141 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 MIR140-201ENST00000385282 100 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 RNA5SP222-201ENST00000411039 105 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 ELOCP20-201ENST00000422460 345 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 AC244023.1-201ENST00000426884 112 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 RNU7-102P-201ENST00000458948 62 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 RNU6-191P-201ENST00000516295 94 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 SNORA62.5-201ENST00000516634 120 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 DEFB117-201ENST00000602356 141 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 AC242498.1-201ENST00000604134 111 ntBASIC0.36□□□□□ -2.35
SCN1AP35498 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
SCN1AP35498 MIR342-201ENST00000362212 99 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.128-201ENST00000363391 112 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.158-201ENST00000363651 101 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.183-201ENST00000363882 113 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 MIR1252-201ENST00000408861 65 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 RNU6-830P-201ENST00000516353 107 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 SNORA27.4-201ENST00000516650 95 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 MIR4680-201ENST00000580906 66 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 MIR8087-201ENST00000612745 78 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 MTND1P7-201ENST00000632801 297 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.35□□□□□ -2.35
SCN1AP35498 MIR18A-201ENST00000362310 71 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 RNU6-1272P-201ENST00000362776 107 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.115-201ENST00000363272 98 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.275-201ENST00000364726 110 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 Y_RNA.394-201ENST00000383942 103 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.35□□□□□ -2.35
SCN1AP35498 AL117351.2-201ENST00000513571 157 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 RNU2-31P-201ENST00000516954 155 ntBASIC0.35□□□□□ -2.35
SCN1AP35498 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.35□□□□□ -2.35
SCN1AP35498 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.34□□□□□ -2.35
SCN1AP35498 RNU6-770P-201ENST00000363929 105 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 Y_RNA.241-201ENST00000364470 117 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 RNY1P8-201ENST00000383970 114 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 MTND4LP11-201ENST00000422184 280 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 AC067940.1-201ENST00000458411 300 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 RNU6-1137P-201ENST00000517073 99 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 AP001094.1-201ENST00000579805 193 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 AL356055.1-201ENST00000602528 446 ntBASIC0.34□□□□□ -2.36
SCN1AP35498 Y_RNA.37-201ENST00000362606 108 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.153-201ENST00000363615 91 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.229-201ENST00000364347 113 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNU4-45P-201ENST00000365469 141 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.455-201ENST00000384230 98 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.460-201ENST00000384255 102 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 SNORA51.10-201ENST00000384418 136 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.509-201ENST00000384506 99 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNU6-985P-201ENST00000410182 104 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AC087499.4-201ENST00000448505 178 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNU7-185P-201ENST00000459215 60 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNY3P15-201ENST00000516297 97 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 MIR2115-201ENST00000516657 100 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AL136317.1-201ENST00000612653 226 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AP001282.2-201ENST00000616149 309 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 Y_RNA.105-201ENST00000363182 111 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNU6-934P-201ENST00000365154 107 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 SNORA33.2-201ENST00000365413 134 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 SNORA79-201ENST00000408376 140 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 MIR548I3-201ENST00000408378 149 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AC113618.1-201ENST00000416747 285 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 MIR18B-201ENST00000454574 71 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 SNORD77.4-201ENST00000516158 81 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 RNU4-54P-201ENST00000516428 129 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AL442663.2-201ENST00000554385 511 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 MIR4771-2-201ENST00000577758 74 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 MIR4771-1-201ENST00000582617 74 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 uc_338.6-201ENST00000613544 171 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AL662814.1-201ENST00000617364 121 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 AC092634.7-201ENST00000621022 103 ntBASIC0.33□□□□□ -2.36
SCN1AP35498 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
SCN1AP35498 SNORA25.1-201ENST00000362326 128 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 Y_RNA.64-201ENST00000362845 102 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 RNU6-945P-201ENST00000383947 107 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 RNY3P5-201ENST00000384127 102 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 MT-TF-201ENST00000387314 71 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 Y_RNA.604-201ENST00000410574 102 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 AC091959.1-201ENST00000495857 238 ntBASIC0.32□□□□□ -2.36
SCN1AP35498 RNU6-635P-201ENST00000516651 102 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms