| TFE3 | P19532 | MIR4287-201 | ENST00000579398 | 78 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| TFE3 | P19532 | TTK-202 | ENST00000369798 | 3010 nt | APPRIS P3 TSL 1 (best) BASIC | 2.31 | □□□□□ -2.04 | | |
| TFE3 | P19532 | DNAH7-201 | ENST00000312428 | 12394 nt | APPRIS P1 TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORA51.10-201 | ENST00000384418 | 136 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL161935.2-201 | ENST00000414627 | 60 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Z98742.3-201 | ENST00000418637 | 326 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL031737.1-201 | ENST00000450125 | 223 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | snoU13.16-201 | ENST00000459350 | 104 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.116-201 | ENST00000363292 | 103 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.299-201 | ENST00000364973 | 94 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.362-201 | ENST00000365518 | 110 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-147P-201 | ENST00000383983 | 107 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.531-201 | ENST00000384589 | 121 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR513A1-201 | ENST00000385138 | 129 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR653-201 | ENST00000385279 | 96 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | POLR2J4-204 | ENST00000418424 | 324 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC004812.1-201 | ENST00000540773 | 146 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL590808.1-201 | ENST00000618696 | 141 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | ASPM-202 | ENST00000367408 | 3747 nt | TSL 1 (best) BASIC | 2.29 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIRLET7G-201 | ENST00000362280 | 84 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORA16B-201 | ENST00000364674 | 135 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNA5SP259-201 | ENST00000365541 | 109 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.430-201 | ENST00000384081 | 110 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.549-201 | ENST00000384657 | 102 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-1104P-201 | ENST00000384723 | 104 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR548D2-201 | ENST00000384955 | 97 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR520C-201 | ENST00000385005 | 87 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNA5SP508-201 | ENST00000411327 | 119 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU7-45P-201 | ENST00000459460 | 63 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | IGHVIII-5-1-201 | ENST00000523059 | 99 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC022523.2-201 | ENST00000561045 | 150 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC022254.1-201 | ENST00000567857 | 235 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR4764-201 | ENST00000580680 | 88 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR4713-201 | ENST00000582691 | 75 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL020996.3-201 | ENST00000606617 | 222 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC008133.2-201 | ENST00000624540 | 351 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | KIF20B-202 | ENST00000371728 | 6419 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORA22.1-201 | ENST00000362701 | 134 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA63.5-201 | ENST00000363548 | 123 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA6-201 | ENST00000384033 | 151 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MT-TI-201 | ENST00000387365 | 69 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | TRAJ23-201 | ENST00000390514 | 63 nt | APPRIS P1 BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU7-113P-201 | ENST00000459273 | 62 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RPL39P34-201 | ENST00000477141 | 156 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RPS23P4-201 | ENST00000487908 | 423 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR3613-201 | ENST00000579844 | 87 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR3124-201 | ENST00000582636 | 67 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AL035470.1-201 | ENST00000622571 | 220 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR6717-201 | ENST00000622747 | 73 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC064859.1-201 | ENST00000624741 | 174 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR1302-5-201 | ENST00000408164 | 150 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC104435.1-201 | ENST00000483483 | 166 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC025887.1-201 | ENST00000578349 | 264 nt | TSL 3 BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC090616.3-202 | ENST00000583346 | 205 nt | TSL 2 BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR5002-201 | ENST00000584713 | 97 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | uc_338.28-201 | ENST00000612082 | 187 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC095038.3-201 | ENST00000634439 | 195 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.309-201 | ENST00000365046 | 111 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.323-201 | ENST00000365157 | 109 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA67.3-201 | ENST00000384366 | 140 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-913P-201 | ENST00000390913 | 95 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA26.6-201 | ENST00000391256 | 115 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RN7SKP223-201 | ENST00000410582 | 62 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AL512326.2-201 | ENST00000426359 | 151 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU7-6P-201 | ENST00000516845 | 62 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AL049779.4-201 | ENST00000604500 | 156 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-94P-201 | ENST00000607728 | 107 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR6841-201 | ENST00000637129 | 72 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | ZDBF2-202 | ENST00000611847 | 9890 nt | TSL 5 BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RICTOR-202 | ENST00000357387 | 9543 nt | APPRIS P1 TSL 1 (best) BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | OR2L2-202 | ENST00000641771 | 4300 nt | APPRIS P1 BASIC | 2.25 | □□□□□ -2.05 | | |
| TFE3 | P19532 | ZNF658B-202 | ENST00000615961 | 3375 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORD115-2-201 | ENST00000362842 | 82 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA1.1-201 | ENST00000364671 | 133 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORD115-20-201 | ENST00000365099 | 82 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-1014P-201 | ENST00000383940 | 103 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-439P-201 | ENST00000384188 | 106 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-106P-201 | ENST00000384405 | 107 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | SNORA64-201 | ENST00000384674 | 134 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | TRAJ39-201 | ENST00000390498 | 63 nt | APPRIS P1 BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RPS3AP1-201 | ENST00000413190 | 320 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNA5SP200-201 | ENST00000516360 | 103 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | TRAJ36-201 | ENST00000614481 | 58 nt | APPRIS P1 BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | MIR8074-201 | ENST00000615081 | 81 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | PCDH11Y-203 | ENST00000362095 | 4220 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.24 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.163-201 | ENST00000363702 | 113 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.354-201 | ENST00000365448 | 111 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC073127.1-201 | ENST00000447336 | 333 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AC113410.1-201 | ENST00000505029 | 247 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | AL513534.2-201 | ENST00000603836 | 250 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | KPNA5-202 | ENST00000368564 | 11311 nt | APPRIS P1 TSL 1 (best) BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | FGF7-206 | ENST00000614567 | 3936 nt | APPRIS P1 TSL 1 (best) BASIC | 2.23 | □□□□□ -2.05 | | |
| TFE3 | P19532 | ENAM-201 | ENST00000396073 | 5679 nt | APPRIS P1 TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.171-201 | ENST00000363760 | 102 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | Y_RNA.344-201 | ENST00000365381 | 112 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-32P-201 | ENST00000383948 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-13P-201 | ENST00000384248 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-1113P-201 | ENST00000384348 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| TFE3 | P19532 | RNU6-12P-201 | ENST00000384604 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |