Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIR518F-201ENST00000384973 87 ntBASIC0.59□□□□□ -2.31
SDC3O75056 SNORD105-201ENST00000386910 85 ntBASIC0.59□□□□□ -2.31
SDC3O75056 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
SDC3O75056 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.31
SDC3O75056 AC113618.1-201ENST00000416747 285 ntBASIC0.59□□□□□ -2.31
SDC3O75056 AC006006.1-201ENST00000603082 144 ntBASIC0.59□□□□□ -2.31
SDC3O75056 AP000942.4-201ENST00000604811 241 ntBASIC0.59□□□□□ -2.31
SDC3O75056 RNU6-369P-201ENST00000362515 102 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU6-888P-201ENST00000363010 101 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU6-639P-201ENST00000384074 107 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU6-125P-201ENST00000384505 107 ntBASIC0.58□□□□□ -2.32
SDC3O75056 MIR548A2-201ENST00000384956 97 ntBASIC0.58□□□□□ -2.32
SDC3O75056 MIR626-201ENST00000385032 94 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU2-55P-201ENST00000411146 174 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU6-938P-201ENST00000411285 103 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU7-73P-201ENST00000458743 63 ntBASIC0.58□□□□□ -2.32
SDC3O75056 RNU6-365P-201ENST00000517113 106 ntBASIC0.58□□□□□ -2.32
SDC3O75056 MIR1273G-201ENST00000577677 100 ntBASIC0.58□□□□□ -2.32
SDC3O75056 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
SDC3O75056 Y_RNA.37-201ENST00000362606 108 ntBASIC0.57□□□□□ -2.32
SDC3O75056 Y_RNA.229-201ENST00000364347 113 ntBASIC0.57□□□□□ -2.32
SDC3O75056 RNU4-10P-201ENST00000364383 140 ntBASIC0.57□□□□□ -2.32
SDC3O75056 RNU6-1227P-201ENST00000383981 107 ntBASIC0.57□□□□□ -2.32
SDC3O75056 RNU6-1289P-201ENST00000384431 106 ntBASIC0.57□□□□□ -2.32
SDC3O75056 AC244098.3-201ENST00000424803 96 ntBASIC0.57□□□□□ -2.32
SDC3O75056 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.57□□□□□ -2.32
SDC3O75056 MTND5P22-201ENST00000458380 195 ntBASIC0.57□□□□□ -2.32
SDC3O75056 RNU7-67P-201ENST00000459003 62 ntBASIC0.57□□□□□ -2.32
SDC3O75056 RNU6-693P-201ENST00000516134 107 ntBASIC0.57□□□□□ -2.32
SDC3O75056 SNORA18.4-201ENST00000516440 124 ntBASIC0.57□□□□□ -2.32
SDC3O75056 AC044792.1-201ENST00000593294 196 ntBASIC0.57□□□□□ -2.32
SDC3O75056 AC134878.1-201ENST00000619901 243 ntBASIC0.57□□□□□ -2.32
SDC3O75056 Y_RNA.24-201ENST00000362508 103 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNY3P5-201ENST00000384127 102 ntBASIC0.56□□□□□ -2.32
SDC3O75056 SNORD61-201ENST00000384252 73 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNU1-119P-201ENST00000391122 165 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNU6-1109P-201ENST00000391187 107 ntBASIC0.56□□□□□ -2.32
SDC3O75056 SNORA26-201ENST00000391286 122 ntBASIC0.56□□□□□ -2.32
SDC3O75056 AC244023.1-201ENST00000426884 112 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNA5SP121-201ENST00000516537 101 ntBASIC0.56□□□□□ -2.32
SDC3O75056 RNU6-504P-201ENST00000516568 104 ntBASIC0.56□□□□□ -2.32
SDC3O75056 SCARNA24.2-201ENST00000516968 130 ntBASIC0.56□□□□□ -2.32
SDC3O75056 AC100767.1-201ENST00000528178 123 ntBASIC0.56□□□□□ -2.32
SDC3O75056 AP003484.1-201ENST00000530974 250 ntBASIC0.56□□□□□ -2.32
SDC3O75056 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.56□□□□□ -2.32
SDC3O75056 AC242498.1-201ENST00000604134 111 ntBASIC0.56□□□□□ -2.32
SDC3O75056 MIR8055-201ENST00000610739 97 ntBASIC0.56□□□□□ -2.32
SDC3O75056 AP001282.2-201ENST00000616149 309 ntBASIC0.56□□□□□ -2.32
SDC3O75056 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.55□□□□□ -2.32
SDC3O75056 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
SDC3O75056 Y_RNA.44-201ENST00000362676 108 ntBASIC0.55□□□□□ -2.32
SDC3O75056 Y_RNA.66-201ENST00000362862 102 ntBASIC0.55□□□□□ -2.32
SDC3O75056 SNORA63C-201ENST00000364578 129 ntBASIC0.55□□□□□ -2.32
SDC3O75056 SNORA27-201ENST00000384323 126 ntBASIC0.55□□□□□ -2.32
SDC3O75056 RNU6-205P-201ENST00000390858 107 ntBASIC0.55□□□□□ -2.32
SDC3O75056 AC090844.1-201ENST00000422019 156 ntBASIC0.55□□□□□ -2.32
SDC3O75056 SNORD2.1-201ENST00000458762 69 ntBASIC0.55□□□□□ -2.32
SDC3O75056 RNU7-53P-201ENST00000516705 60 ntBASIC0.55□□□□□ -2.32
SDC3O75056 AC011195.1-201ENST00000578177 177 ntBASIC0.55□□□□□ -2.32
SDC3O75056 Z97988.1-201ENST00000637697 135 ntBASIC0.55□□□□□ -2.32
SDC3O75056 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.11-201ENST00000362375 109 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.82-201ENST00000363000 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.92-201ENST00000363043 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.235-201ENST00000364412 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.306-201ENST00000365015 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.312-201ENST00000365089 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.322-201ENST00000365151 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 RNU6-934P-201ENST00000365154 107 ntBASIC0.54□□□□□ -2.32
SDC3O75056 AC092628.1-201ENST00000436250 252 ntBASIC0.54□□□□□ -2.32
SDC3O75056 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.650-201ENST00000459002 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 RPS29P24-201ENST00000486345 171 ntBASIC0.54□□□□□ -2.32
SDC3O75056 RNA5SP153-201ENST00000516498 76 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.777-201ENST00000516982 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 RNU6-958P-201ENST00000516995 106 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.771-201ENST00000598668 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 AC097639.2-201ENST00000603159 172 ntBASIC0.54□□□□□ -2.32
SDC3O75056 Y_RNA.789-201ENST00000622480 102 ntBASIC0.54□□□□□ -2.32
SDC3O75056 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.54□□□□□ -2.32
SDC3O75056 AC010487.4-201ENST00000637027 61 ntBASIC0.54□□□□□ -2.32
SDC3O75056 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
SDC3O75056 MIR335-201ENST00000362173 94 ntBASIC0.53□□□□□ -2.32
SDC3O75056 RNU6-484P-201ENST00000384016 107 ntBASIC0.53□□□□□ -2.32
SDC3O75056 Y_RNA.572-201ENST00000384757 98 ntBASIC0.53□□□□□ -2.32
SDC3O75056 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
SDC3O75056 RNU6-913P-201ENST00000390913 95 ntBASIC0.53□□□□□ -2.32
SDC3O75056 RNA5SP222-201ENST00000411039 105 ntBASIC0.53□□□□□ -2.32
SDC3O75056 TRBVB-201ENST00000477100 408 ntBASIC0.53□□□□□ -2.32
SDC3O75056 RNU6-1299P-201ENST00000516316 100 ntBASIC0.53□□□□□ -2.32
SDC3O75056 RNU6-570P-201ENST00000517051 105 ntBASIC0.53□□□□□ -2.32
SDC3O75056 Z83818.1-201ENST00000603584 150 ntBASIC0.53□□□□□ -2.32
SDC3O75056 U2.14-201ENST00000615943 113 ntBASIC0.53□□□□□ -2.32
SDC3O75056 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
SDC3O75056 MIR5087-201ENST00000635826 76 ntBASIC0.53□□□□□ -2.32
SDC3O75056 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
SDC3O75056 Y_RNA.117-201ENST00000363294 101 ntBASIC0.52□□□□□ -2.33
SDC3O75056 Y_RNA.237-201ENST00000364439 102 ntBASIC0.52□□□□□ -2.33
SDC3O75056 RNU6-740P-201ENST00000364734 105 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms