Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MIR1302-7-201ENST00000408841 72 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 RNU6-994P-201ENST00000410507 111 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 AL118496.2-201ENST00000448300 230 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 SNRPGP8-201ENST00000454064 226 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 RNU6-453P-201ENST00000516819 85 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 RNU6-958P-201ENST00000516995 106 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 AP000753.3-201ENST00000604083 169 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 SNORD114-21-201ENST00000606412 72 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 AC106800.4-201ENST00000614905 153 ntBASIC1.06□□□□□ -2.24
HOXC11O43248 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.06□□□□□ -2.24
HOXC11O43248 RNU6-103P-201ENST00000363686 107 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 SNORD27-201ENST00000363981 72 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 RNU6-728P-201ENST00000365375 104 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 RNU6-484P-201ENST00000384016 107 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 SNORA27-201ENST00000384323 126 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 RNU6-613P-201ENST00000410412 108 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.05□□□□□ -2.24
HOXC11O43248 MIR4643-201ENST00000577473 78 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.05□□□□□ -2.24
HOXC11O43248 AP000942.4-201ENST00000604811 241 ntBASIC1.05□□□□□ -2.24
HOXC11O43248 Y_RNA.91-201ENST00000363042 107 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 RNU6-653P-201ENST00000363074 106 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 RNU6-381P-201ENST00000391259 108 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 POLR2J4-204ENST00000418424 324 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 SNORA18.4-201ENST00000516440 124 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 RNU7-53P-201ENST00000516705 60 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 AC036111.3-201ENST00000526389 112 ntBASIC1.04□□□□□ -2.24
HOXC11O43248 Y_RNA.76-201ENST00000362931 109 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 SNORD45.3-201ENST00000363836 72 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 RNU6-654P-201ENST00000364373 107 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 RNU4-38P-201ENST00000364472 129 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 Y_RNA.410-201ENST00000383992 113 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 SNORA24-201ENST00000384096 131 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 Y_RNA.494-201ENST00000384432 111 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 Y_RNA.562-201ENST00000384695 113 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 MIR548A2-201ENST00000384956 97 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 RPS3AP1-201ENST00000413190 320 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 RPS29P28-201ENST00000446439 141 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 AL078603.1-201ENST00000603824 313 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 AL136317.1-201ENST00000612653 226 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 RMST_2.1-201ENST00000617263 136 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 U4.1-201ENST00000620349 87 ntBASIC1.03□□□□□ -2.24
HOXC11O43248 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
HOXC11O43248 Y_RNA.66-201ENST00000362862 102 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 Y_RNA.478-201ENST00000384358 107 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 MIR489-201ENST00000384923 84 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.02□□□□□ -2.25
HOXC11O43248 RPS29P1-201ENST00000465274 159 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 RPS29P24-201ENST00000486345 171 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 RNA5SP220-201ENST00000516298 104 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 RNU6-197P-201ENST00000516680 100 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 SNORD36C-201ENST00000516733 66 ntBASIC1.02□□□□□ -2.25
HOXC11O43248 Y_RNA.65-201ENST00000362846 100 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 Y_RNA.350-201ENST00000365409 98 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 RNU6-1189P-201ENST00000383958 107 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 RNU6-42P-201ENST00000384165 107 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 RNU6-938P-201ENST00000411285 103 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 AL035398.1-201ENST00000430869 322 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 MTND3P2-201ENST00000438452 342 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 U7.7-201ENST00000459276 60 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 Y_RNA.668-201ENST00000516233 93 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 RNA5SP255-201ENST00000516370 107 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.01□□□□□ -2.25
HOXC11O43248 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.01□□□□□ -2.25
HOXC11O43248 AC103810.9-201ENST00000606688 112 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 RNU6-94P-201ENST00000607728 107 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 AC062037.2-201ENST00000610137 73 ntBASIC1.01□□□□□ -2.25
HOXC11O43248 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
HOXC11O43248 Y_RNA.168-201ENST00000363740 102 ntBASIC1□□□□□ -2.25
HOXC11O43248 RNU6-1187P-201ENST00000364771 110 ntBASIC1□□□□□ -2.25
HOXC11O43248 Y_RNA.308-201ENST00000365043 101 ntBASIC1□□□□□ -2.25
HOXC11O43248 RNU1-36P-201ENST00000365130 165 ntBASIC1□□□□□ -2.25
HOXC11O43248 Y_RNA.477-201ENST00000384352 108 ntBASIC1□□□□□ -2.25
HOXC11O43248 MT-TN-201ENST00000387400 73 ntBASIC1□□□□□ -2.25
HOXC11O43248 SNORD89-201ENST00000390981 114 ntBASIC1□□□□□ -2.25
HOXC11O43248 RNA5SP95-201ENST00000410319 137 ntBASIC1□□□□□ -2.25
HOXC11O43248 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1□□□□□ -2.25
HOXC11O43248 AF228730.3-201ENST00000436691 102 ntBASIC1□□□□□ -2.25
HOXC11O43248 RNU7-73P-201ENST00000458743 63 ntBASIC1□□□□□ -2.25
HOXC11O43248 MIR4744-201ENST00000581563 82 ntBASIC1□□□□□ -2.25
HOXC11O43248 MIR151B-201ENST00000584249 96 ntBASIC1□□□□□ -2.25
HOXC11O43248 AC097639.2-201ENST00000603159 172 ntBASIC1□□□□□ -2.25
HOXC11O43248 AL020996.3-201ENST00000606617 222 ntBASIC1□□□□□ -2.25
HOXC11O43248 MIR6788-201ENST00000618842 66 ntBASIC1□□□□□ -2.25
HOXC11O43248 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
HOXC11O43248 RNU6-196P-201ENST00000384315 107 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
HOXC11O43248 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 AL121914.1-201ENST00000450188 156 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 RNU7-96P-201ENST00000459535 64 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 AC025627.3-201ENST00000582078 182 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 MIR4264-201ENST00000583520 66 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 AC211469.2-201ENST00000605461 205 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 MIR6857-201ENST00000613267 93 ntBASIC0.99□□□□□ -2.25
HOXC11O43248 MIR377-201ENST00000362145 69 ntBASIC0.98□□□□□ -2.25
HOXC11O43248 RNU6-702P-201ENST00000364982 107 ntBASIC0.98□□□□□ -2.25
HOXC11O43248 ACA64.5-201ENST00000516207 127 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms